Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions
As a well-established multidrug combinations schema, traditional Chinese medicine (herbal prescription) has been used for thousands of years in real-world clinical settings. This paper uses a complex network approach to investigate the regularities underlying multidrug combinations in herbal prescri...
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doaj-e9d183a4d19448a98bf7a14c3eb9af6d2021-01-20T04:39:20ZengFrontiers Media S.A.Frontiers in Pharmacology1663-98122021-01-011110.3389/fphar.2020.590824590824Network Patterns of Herbal Combinations in Traditional Chinese Clinical PrescriptionsNing Wang0Ninglin Du1Yonghong Peng2Kuo Yang3Zixin Shu4Kai Chang5Di Wu6Di Wu7Jian Yu8Caiyan Jia9Yana Zhou10Xiaodong Li11Baoyan Liu12Zhuye Gao13Zhuye Gao14Runshun Zhang15Runshun Zhang16Xuezhong Zhou17Medical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaDepartment of Computing and Mathematics, Manchester Metropolitan University, Manchester, United KingdomMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaAdams School of Dentistry, University of North Carolina, Chapel Hill, NC, United StatesDepartment of Biostatistics, UNC Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, United StatesMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaHubei Provincial Hospital of Traditional Chinese Medicine, Wuhan, ChinaHubei Provincial Hospital of Traditional Chinese Medicine, Wuhan, ChinaChina Academy of Chinese Medical Sciences, Beijing, ChinaNational Clinical Research Center for Chinese Medicine Cardiology, Beijing, ChinaXiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, ChinaXiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, ChinaGuanganmen Hospital, China Academy of Chinese Medical Sciences, Beijing, ChinaMedical Intelligence Institute, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, ChinaAs a well-established multidrug combinations schema, traditional Chinese medicine (herbal prescription) has been used for thousands of years in real-world clinical settings. This paper uses a complex network approach to investigate the regularities underlying multidrug combinations in herbal prescriptions. Using five collected large-scale real-world clinical herbal prescription datasets, we construct five weighted herbal combination networks with herb as nodes and herbal combinational use in herbal prescription as links. We found that the weight distribution of herbal combinations displays a clear power law, which means that most herb pairs were used in low frequency and some herb pairs were used in very high frequency. Furthermore, we found that it displays a clear linear negative correlation between the clustering coefficients and the degree of nodes in the herbal combination network (HCNet). This indicates that hierarchical properties exist in the HCNet. Finally, we investigate the molecular network interaction patterns between herb related target modules (i.e., subnetworks) in herbal prescriptions using a network-based approach and further explore the correlation between the distribution of herb combinations and prescriptions. We found that the more the hierarchical prescription, the better the corresponding effect. The results also reflected a well-recognized principle called “Jun-Chen-Zuo-Shi” in TCM formula theories. This also gives references for multidrug combination development in the field of network pharmacology and provides the guideline for the clinical use of combination therapy for chronic diseases.https://www.frontiersin.org/articles/10.3389/fphar.2020.590824/fullnetwork pharmacologycomplex networkherb combination networkclinical prescriptionnetwork pattern |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Ning Wang Ninglin Du Yonghong Peng Kuo Yang Zixin Shu Kai Chang Di Wu Di Wu Jian Yu Caiyan Jia Yana Zhou Xiaodong Li Baoyan Liu Zhuye Gao Zhuye Gao Runshun Zhang Runshun Zhang Xuezhong Zhou |
spellingShingle |
Ning Wang Ninglin Du Yonghong Peng Kuo Yang Zixin Shu Kai Chang Di Wu Di Wu Jian Yu Caiyan Jia Yana Zhou Xiaodong Li Baoyan Liu Zhuye Gao Zhuye Gao Runshun Zhang Runshun Zhang Xuezhong Zhou Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions Frontiers in Pharmacology network pharmacology complex network herb combination network clinical prescription network pattern |
author_facet |
Ning Wang Ninglin Du Yonghong Peng Kuo Yang Zixin Shu Kai Chang Di Wu Di Wu Jian Yu Caiyan Jia Yana Zhou Xiaodong Li Baoyan Liu Zhuye Gao Zhuye Gao Runshun Zhang Runshun Zhang Xuezhong Zhou |
author_sort |
Ning Wang |
title |
Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions |
title_short |
Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions |
title_full |
Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions |
title_fullStr |
Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions |
title_full_unstemmed |
Network Patterns of Herbal Combinations in Traditional Chinese Clinical Prescriptions |
title_sort |
network patterns of herbal combinations in traditional chinese clinical prescriptions |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Pharmacology |
issn |
1663-9812 |
publishDate |
2021-01-01 |
description |
As a well-established multidrug combinations schema, traditional Chinese medicine (herbal prescription) has been used for thousands of years in real-world clinical settings. This paper uses a complex network approach to investigate the regularities underlying multidrug combinations in herbal prescriptions. Using five collected large-scale real-world clinical herbal prescription datasets, we construct five weighted herbal combination networks with herb as nodes and herbal combinational use in herbal prescription as links. We found that the weight distribution of herbal combinations displays a clear power law, which means that most herb pairs were used in low frequency and some herb pairs were used in very high frequency. Furthermore, we found that it displays a clear linear negative correlation between the clustering coefficients and the degree of nodes in the herbal combination network (HCNet). This indicates that hierarchical properties exist in the HCNet. Finally, we investigate the molecular network interaction patterns between herb related target modules (i.e., subnetworks) in herbal prescriptions using a network-based approach and further explore the correlation between the distribution of herb combinations and prescriptions. We found that the more the hierarchical prescription, the better the corresponding effect. The results also reflected a well-recognized principle called “Jun-Chen-Zuo-Shi” in TCM formula theories. This also gives references for multidrug combination development in the field of network pharmacology and provides the guideline for the clinical use of combination therapy for chronic diseases. |
topic |
network pharmacology complex network herb combination network clinical prescription network pattern |
url |
https://www.frontiersin.org/articles/10.3389/fphar.2020.590824/full |
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