| Summary: | The effects of the duration of the floods on abiotic variables and attributes of species tolerant and intolerant to hypoxia (STH and SIH respectively) were evaluated in rivers and lakes of the upper Paraná River. Fish were sampled once a year, in six sampling stations, during the high water period from 2000 to 2003. There were overall reductions in dissolved oxygen levels and increases in transparency of water in lakes in years of moderate floods. The duration of floods influenced species differentially based on their tolerance to hypoxia: in moderate floods, richness of STH increased and numerical abundance and biomass of SIH reduced significantly. Opposite relationships were detected between dissolved oxygen and the attributes of STH and SIH. Dissolved oxygen was the best predictor of variability of STH and SIH in years of moderate floods, whereas water transparency predicted significant amounts of STH in years of short floods. Being positively affected by dissolved oxygen reductions, STH seem to take advantages in persisting in seasonally harsh lentic habitats. The incorporation of abiotic data as well the differential tolerance of species to hypoxia would improve further investigations of the effects of interannual variations in the flood pulse on tropical fish assemblages
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