Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images

Automated classification of renal masses detected at computed tomography (CT) examinations into benign cyst versus solid mass is clinically valuable. This distinction may be challenging at single-phase contrast-enhanced CE-CT examinations, where cysts may simulate solid masses and where renal masses...

Full description

Bibliographic Details
Main Authors: Fatemeh Zabihollahy, N. Schieda, E. Ukwatta
Format: Article
Language:English
Published: IEEE 2020-01-01
Series:IEEE Access
Subjects:
Online Access:https://ieeexplore.ieee.org/document/8952718/
id doaj-e41c78388be24570b832720fe8909a58
record_format Article
spelling doaj-e41c78388be24570b832720fe8909a582021-03-30T01:19:00ZengIEEEIEEE Access2169-35362020-01-0188595860210.1109/ACCESS.2020.29647558952718Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography ImagesFatemeh Zabihollahy0https://orcid.org/0000-0003-3362-1009N. Schieda1https://orcid.org/0000-0002-2653-4786E. Ukwatta2https://orcid.org/0000-0003-0180-4716Department of System and Computer Engineering, Carleton University, Ottawa, ON, CanadaDepartment of Radiology, University of Ottawa, Ottawa, ON, CanadaSchool of Engineering, University of Guelph, Guelph, ON, CanadaAutomated classification of renal masses detected at computed tomography (CT) examinations into benign cyst versus solid mass is clinically valuable. This distinction may be challenging at single-phase contrast-enhanced CE-CT examinations, where cysts may simulate solid masses and where renal masses are most commonly incidentally detected. This may lead to unnecessary and costly follow-up imaging for accurate characterization. In this paper, we describe a patch-based CNN method to differentiate benign cysts from solid renal masses using single-phase CECT images. The predictions of the network for patches extracted from a manually segmented lesion are combined through the majority voting system for final diagnosis. We used a dataset comprised of single-phase CECT images of 315 patients with 77 benign (oncocytomas, and fat poor renal angiomyolipoma) and 238 malignant (renal cell carcinoma including clear cell, papillary, and chromophobe subtypes) tumors. We trained our proposed network using patches extracted and artificially augmented from 40 CECT scans. The presented algorithm was evaluated using 275 unseen CECT test images consisting of 327 renal masses by comparing algorithm-generated labels to those labeled by experts and achieved mean accuracy, precision, and recall of 88.96%, 95.64%, and 91.64%. Our method yielded accuracy of 91.21% ± 25.88% as mean ± standard deviation at the patient level. The AUC was reported as 0.804. The results indicate that our algorithm may accurately characterize benign cysts from solid masses with a high degree of accuracy and may be clinically valuable to prevent unnecessary imaging follow-up for characterization in a proportion of patients.https://ieeexplore.ieee.org/document/8952718/Renal massbenign cystmalignantconvolutional neural network
collection DOAJ
language English
format Article
sources DOAJ
author Fatemeh Zabihollahy
N. Schieda
E. Ukwatta
spellingShingle Fatemeh Zabihollahy
N. Schieda
E. Ukwatta
Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
IEEE Access
Renal mass
benign cyst
malignant
convolutional neural network
author_facet Fatemeh Zabihollahy
N. Schieda
E. Ukwatta
author_sort Fatemeh Zabihollahy
title Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
title_short Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
title_full Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
title_fullStr Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
title_full_unstemmed Patch-Based Convolutional Neural Network for Differentiation of Cyst From Solid Renal Mass on Contrast-Enhanced Computed Tomography Images
title_sort patch-based convolutional neural network for differentiation of cyst from solid renal mass on contrast-enhanced computed tomography images
publisher IEEE
series IEEE Access
issn 2169-3536
publishDate 2020-01-01
description Automated classification of renal masses detected at computed tomography (CT) examinations into benign cyst versus solid mass is clinically valuable. This distinction may be challenging at single-phase contrast-enhanced CE-CT examinations, where cysts may simulate solid masses and where renal masses are most commonly incidentally detected. This may lead to unnecessary and costly follow-up imaging for accurate characterization. In this paper, we describe a patch-based CNN method to differentiate benign cysts from solid renal masses using single-phase CECT images. The predictions of the network for patches extracted from a manually segmented lesion are combined through the majority voting system for final diagnosis. We used a dataset comprised of single-phase CECT images of 315 patients with 77 benign (oncocytomas, and fat poor renal angiomyolipoma) and 238 malignant (renal cell carcinoma including clear cell, papillary, and chromophobe subtypes) tumors. We trained our proposed network using patches extracted and artificially augmented from 40 CECT scans. The presented algorithm was evaluated using 275 unseen CECT test images consisting of 327 renal masses by comparing algorithm-generated labels to those labeled by experts and achieved mean accuracy, precision, and recall of 88.96%, 95.64%, and 91.64%. Our method yielded accuracy of 91.21% ± 25.88% as mean ± standard deviation at the patient level. The AUC was reported as 0.804. The results indicate that our algorithm may accurately characterize benign cysts from solid masses with a high degree of accuracy and may be clinically valuable to prevent unnecessary imaging follow-up for characterization in a proportion of patients.
topic Renal mass
benign cyst
malignant
convolutional neural network
url https://ieeexplore.ieee.org/document/8952718/
work_keys_str_mv AT fatemehzabihollahy patchbasedconvolutionalneuralnetworkfordifferentiationofcystfromsolidrenalmassoncontrastenhancedcomputedtomographyimages
AT nschieda patchbasedconvolutionalneuralnetworkfordifferentiationofcystfromsolidrenalmassoncontrastenhancedcomputedtomographyimages
AT eukwatta patchbasedconvolutionalneuralnetworkfordifferentiationofcystfromsolidrenalmassoncontrastenhancedcomputedtomographyimages
_version_ 1724187302891094016