Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients

Purpose. As hepatocellular carcinoma (HCC) is a complex disease, it is hard to classify HCC with a specific biomarker. This study used data from TCGA to create a genetic signature for predicting the prognosis of HCC patients. Methods. In a group of HCC patients (n = 424) from TCGA, mRNA profiling wa...

Full description

Bibliographic Details
Main Authors: Ming Wang, Feng Jiang, Ke Wei, Erli Mao, Guoyong Yin, Chuyan Wu
Format: Article
Language:English
Published: Hindawi Limited 2021-01-01
Series:Journal of Oncology
Online Access:http://dx.doi.org/10.1155/2021/5564525
id doaj-e192d2ddcbd74e21a9b9d99639e9d0bf
record_format Article
spelling doaj-e192d2ddcbd74e21a9b9d99639e9d0bf2021-05-17T00:01:22ZengHindawi LimitedJournal of Oncology1687-84692021-01-01202110.1155/2021/5564525Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma PatientsMing Wang0Feng Jiang1Ke Wei2Erli Mao3Guoyong Yin4Chuyan Wu5Department of Plastic and Burn SurgeryPediatric DepartmentMedical Service SectionDepartment of Rehabilitation MedicineDepartment of OrthopedicsDepartment of Rehabilitation MedicinePurpose. As hepatocellular carcinoma (HCC) is a complex disease, it is hard to classify HCC with a specific biomarker. This study used data from TCGA to create a genetic signature for predicting the prognosis of HCC patients. Methods. In a group of HCC patients (n = 424) from TCGA, mRNA profiling was carried out. To recognize gene sets that differed significantly between HCC and normal tissues, an enrichment study of genes was carried out. Cox relative hazard regression models have been used to identify genes that are significantly associated with overall survival. To test the function of a prognostic risk parameter, the following multivariate Cox regression analysis was used. The log-rank test and Kaplan–Meier survival estimates were used to test the significance of risk parameters for predictive prognoses. Results. Eight genes have been identified as having a significant link to overall survival (PAM, NUP155, GOT2, KDELR3, PKM, NSDHL, ENO1, and SRD5A3). The 377 HCC patients were divided into eight-gene signature-based high/low-risk subgroups. The eight-gene signature’s prognostic ability was unaffected by a number of factors. Conclusion. To predict the survival of patients with HCC, an eight-gene signature associated with cellular glycolysis was then identified. The findings shed light on cellular glycolysis processes and the diagnosis of patients with low HCC prognoses.http://dx.doi.org/10.1155/2021/5564525
collection DOAJ
language English
format Article
sources DOAJ
author Ming Wang
Feng Jiang
Ke Wei
Erli Mao
Guoyong Yin
Chuyan Wu
spellingShingle Ming Wang
Feng Jiang
Ke Wei
Erli Mao
Guoyong Yin
Chuyan Wu
Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
Journal of Oncology
author_facet Ming Wang
Feng Jiang
Ke Wei
Erli Mao
Guoyong Yin
Chuyan Wu
author_sort Ming Wang
title Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
title_short Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
title_full Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
title_fullStr Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
title_full_unstemmed Identification of Novel Gene Signature Associated with Cell Glycolysis to Predict Survival in Hepatocellular Carcinoma Patients
title_sort identification of novel gene signature associated with cell glycolysis to predict survival in hepatocellular carcinoma patients
publisher Hindawi Limited
series Journal of Oncology
issn 1687-8469
publishDate 2021-01-01
description Purpose. As hepatocellular carcinoma (HCC) is a complex disease, it is hard to classify HCC with a specific biomarker. This study used data from TCGA to create a genetic signature for predicting the prognosis of HCC patients. Methods. In a group of HCC patients (n = 424) from TCGA, mRNA profiling was carried out. To recognize gene sets that differed significantly between HCC and normal tissues, an enrichment study of genes was carried out. Cox relative hazard regression models have been used to identify genes that are significantly associated with overall survival. To test the function of a prognostic risk parameter, the following multivariate Cox regression analysis was used. The log-rank test and Kaplan–Meier survival estimates were used to test the significance of risk parameters for predictive prognoses. Results. Eight genes have been identified as having a significant link to overall survival (PAM, NUP155, GOT2, KDELR3, PKM, NSDHL, ENO1, and SRD5A3). The 377 HCC patients were divided into eight-gene signature-based high/low-risk subgroups. The eight-gene signature’s prognostic ability was unaffected by a number of factors. Conclusion. To predict the survival of patients with HCC, an eight-gene signature associated with cellular glycolysis was then identified. The findings shed light on cellular glycolysis processes and the diagnosis of patients with low HCC prognoses.
url http://dx.doi.org/10.1155/2021/5564525
work_keys_str_mv AT mingwang identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
AT fengjiang identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
AT kewei identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
AT erlimao identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
AT guoyongyin identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
AT chuyanwu identificationofnovelgenesignatureassociatedwithcellglycolysistopredictsurvivalinhepatocellularcarcinomapatients
_version_ 1721438832794009600