Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests

Accurate measurement of fetal biometrics in ultrasound at different trimesters is essential in assisting clinicians to conduct pregnancy diagnosis. However, the accuracy of manual segmentation for measurement is highly user-dependent. Here, we design a general framework for automatically segmenting...

Full description

Bibliographic Details
Main Authors: Xin Yang, Haoming Li, Li Liu, Dong Ni
Format: Article
Language:English
Published: Compuscript Ltd 2020-12-01
Series:BIO Integration
Subjects:
Online Access:https://www.ingentaconnect.com/content/cscript/bioi/2020/00000001/00000003/art00004
id doaj-e1229156b12449df95313500a06abd21
record_format Article
spelling doaj-e1229156b12449df95313500a06abd212021-07-16T12:12:27ZengCompuscript LtdBIO Integration2712-00822020-12-011311812910.15212/bioi-2020-0016Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random ForestsXin Yang0Haoming Li1Li Liu2Dong Ni3National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, School of Biomedical Engineering, Health Science Center, Shenzhen University, Shenzhen 518060, ChinaNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, School of Biomedical Engineering, Health Science Center, Shenzhen University, Shenzhen 518060, ChinaDepartment of Electronic Engineering, the Chinese University of Hong Kong, Hong Kong, ChinaNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, School of Biomedical Engineering, Health Science Center, Shenzhen University, Shenzhen 518060, ChinaAccurate measurement of fetal biometrics in ultrasound at different trimesters is essential in assisting clinicians to conduct pregnancy diagnosis. However, the accuracy of manual segmentation for measurement is highly user-dependent. Here, we design a general framework for automatically segmenting fetal anatomical structures in two-dimensional (2D) ultrasound (US) images and thus make objective biometric measurements available. We first introduce structured random forests (SRFs) as the core discriminative predictor to recognize the region of fetal anatomical structures with a primary classification map. The patch-wise joint labeling presented by SRFs has inherent advantages in identifying an ambiguous/fuzzy boundary and reconstructing incomplete anatomical boundary in US. Then, to get a more accurate and smooth classification map, a scale-aware auto-context model is injected to enhance the contour details of the classification map from various visual levels. Final segmentation can be obtained from the converged classification map with thresholding. Our framework is validated on two important biometric measurements, which are fetal head circumference (HC) and abdominal circumference (AC). The final results illustrate that our proposed method outperforms state-of-the-art methods in terms of segmentation accuracy.https://www.ingentaconnect.com/content/cscript/bioi/2020/00000001/00000003/art00004automatic measurementcontour enhancementfetal biometricsstructured random forestsultrasound image segmentation
collection DOAJ
language English
format Article
sources DOAJ
author Xin Yang
Haoming Li
Li Liu
Dong Ni
spellingShingle Xin Yang
Haoming Li
Li Liu
Dong Ni
Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
BIO Integration
automatic measurement
contour enhancement
fetal biometrics
structured random forests
ultrasound image segmentation
author_facet Xin Yang
Haoming Li
Li Liu
Dong Ni
author_sort Xin Yang
title Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
title_short Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
title_full Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
title_fullStr Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
title_full_unstemmed Scale-aware Auto-context-guided Fetal US Segmentation with Structured Random Forests
title_sort scale-aware auto-context-guided fetal us segmentation with structured random forests
publisher Compuscript Ltd
series BIO Integration
issn 2712-0082
publishDate 2020-12-01
description Accurate measurement of fetal biometrics in ultrasound at different trimesters is essential in assisting clinicians to conduct pregnancy diagnosis. However, the accuracy of manual segmentation for measurement is highly user-dependent. Here, we design a general framework for automatically segmenting fetal anatomical structures in two-dimensional (2D) ultrasound (US) images and thus make objective biometric measurements available. We first introduce structured random forests (SRFs) as the core discriminative predictor to recognize the region of fetal anatomical structures with a primary classification map. The patch-wise joint labeling presented by SRFs has inherent advantages in identifying an ambiguous/fuzzy boundary and reconstructing incomplete anatomical boundary in US. Then, to get a more accurate and smooth classification map, a scale-aware auto-context model is injected to enhance the contour details of the classification map from various visual levels. Final segmentation can be obtained from the converged classification map with thresholding. Our framework is validated on two important biometric measurements, which are fetal head circumference (HC) and abdominal circumference (AC). The final results illustrate that our proposed method outperforms state-of-the-art methods in terms of segmentation accuracy.
topic automatic measurement
contour enhancement
fetal biometrics
structured random forests
ultrasound image segmentation
url https://www.ingentaconnect.com/content/cscript/bioi/2020/00000001/00000003/art00004
work_keys_str_mv AT xinyang scaleawareautocontextguidedfetalussegmentationwithstructuredrandomforests
AT haomingli scaleawareautocontextguidedfetalussegmentationwithstructuredrandomforests
AT liliu scaleawareautocontextguidedfetalussegmentationwithstructuredrandomforests
AT dongni scaleawareautocontextguidedfetalussegmentationwithstructuredrandomforests
_version_ 1721297696753451008