Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

• Main Authors: Wei Wang, Minxuan Xia, Jie Chen, Fenni Deng, Rui Yuan, Xiaopei Zhang, Fafu Shen
• Format: Article
• Language: English
• Published: Elsevier 2016-12-01
• Series: Data in Brief
• Subjects: Phylogenetic tree; RAMPAGE Ramachandran plot analysis; SOD; Cotton
• Online Access: http://www.sciencedirect.com/science/article/pii/S2352340916303134
• ISSN: 2352-3409

The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4].