Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds

A theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the m...

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Main Authors: Goar Sánchez–Sanz, Ibon Alkorta, José Elguero
Format: Article
Language:English
Published: MDPI AG 2017-02-01
Series:Molecules
Subjects:
MP2
Online Access:http://www.mdpi.com/1420-3049/22/2/227
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spelling doaj-dc5656bb2c4a4cc692cc05951a35c3232020-11-24T22:55:22ZengMDPI AGMolecules1420-30492017-02-0122222710.3390/molecules22020227molecules22020227Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen BondsGoar Sánchez–Sanz0Ibon Alkorta1José Elguero2Irish Centre of High-End Computing, Grand Canal Quay, Dublin 2, IrelandInstituto de Química Médica, CSIC, Juan de la Cierva, 3, E–28006 Madrid, SpainInstituto de Química Médica, CSIC, Juan de la Cierva, 3, E–28006 Madrid, SpainA theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the most stable ones followed by those with a chalcogen O:Y interaction, those with a YH:O hydrogen bond (Y = S and Se) being the least stable ones. The electron density values at the hydrogen bond critical points indicate that they have partial covalent character. Natural Bond Orbital (NBO) analysis shows stabilization due to the charge transfer between lone pair orbitals towards empty Y-H that correlate with the interatomic distances. The electron density shift maps and non-covalent indexes in the different systems are consistent with the relative strength of the interactions. The structures found on the CSD were used to compare the experimental and calculated results.http://www.mdpi.com/1420-3049/22/2/227chalcogen bondsnon-covalent interactionsMP2interaction energyintramolecular interactionshydrogen bonds
collection DOAJ
language English
format Article
sources DOAJ
author Goar Sánchez–Sanz
Ibon Alkorta
José Elguero
spellingShingle Goar Sánchez–Sanz
Ibon Alkorta
José Elguero
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
Molecules
chalcogen bonds
non-covalent interactions
MP2
interaction energy
intramolecular interactions
hydrogen bonds
author_facet Goar Sánchez–Sanz
Ibon Alkorta
José Elguero
author_sort Goar Sánchez–Sanz
title Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
title_short Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
title_full Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
title_fullStr Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
title_full_unstemmed Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
title_sort theoretical study of intramolecular interactions in peri-substituted naphthalenes: chalcogen and hydrogen bonds
publisher MDPI AG
series Molecules
issn 1420-3049
publishDate 2017-02-01
description A theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the most stable ones followed by those with a chalcogen O:Y interaction, those with a YH:O hydrogen bond (Y = S and Se) being the least stable ones. The electron density values at the hydrogen bond critical points indicate that they have partial covalent character. Natural Bond Orbital (NBO) analysis shows stabilization due to the charge transfer between lone pair orbitals towards empty Y-H that correlate with the interatomic distances. The electron density shift maps and non-covalent indexes in the different systems are consistent with the relative strength of the interactions. The structures found on the CSD were used to compare the experimental and calculated results.
topic chalcogen bonds
non-covalent interactions
MP2
interaction energy
intramolecular interactions
hydrogen bonds
url http://www.mdpi.com/1420-3049/22/2/227
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AT ibonalkorta theoreticalstudyofintramolecularinteractionsinperisubstitutednaphthaleneschalcogenandhydrogenbonds
AT joseelguero theoreticalstudyofintramolecularinteractionsinperisubstitutednaphthaleneschalcogenandhydrogenbonds
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