Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds
A theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the m...
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doaj-dc5656bb2c4a4cc692cc05951a35c3232020-11-24T22:55:22ZengMDPI AGMolecules1420-30492017-02-0122222710.3390/molecules22020227molecules22020227Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen BondsGoar Sánchez–Sanz0Ibon Alkorta1José Elguero2Irish Centre of High-End Computing, Grand Canal Quay, Dublin 2, IrelandInstituto de Química Médica, CSIC, Juan de la Cierva, 3, E–28006 Madrid, SpainInstituto de Química Médica, CSIC, Juan de la Cierva, 3, E–28006 Madrid, SpainA theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the most stable ones followed by those with a chalcogen O:Y interaction, those with a YH:O hydrogen bond (Y = S and Se) being the least stable ones. The electron density values at the hydrogen bond critical points indicate that they have partial covalent character. Natural Bond Orbital (NBO) analysis shows stabilization due to the charge transfer between lone pair orbitals towards empty Y-H that correlate with the interatomic distances. The electron density shift maps and non-covalent indexes in the different systems are consistent with the relative strength of the interactions. The structures found on the CSD were used to compare the experimental and calculated results.http://www.mdpi.com/1420-3049/22/2/227chalcogen bondsnon-covalent interactionsMP2interaction energyintramolecular interactionshydrogen bonds |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Goar Sánchez–Sanz Ibon Alkorta José Elguero |
spellingShingle |
Goar Sánchez–Sanz Ibon Alkorta José Elguero Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds Molecules chalcogen bonds non-covalent interactions MP2 interaction energy intramolecular interactions hydrogen bonds |
author_facet |
Goar Sánchez–Sanz Ibon Alkorta José Elguero |
author_sort |
Goar Sánchez–Sanz |
title |
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds |
title_short |
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds |
title_full |
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds |
title_fullStr |
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds |
title_full_unstemmed |
Theoretical Study of Intramolecular Interactions in Peri-Substituted Naphthalenes: Chalcogen and Hydrogen Bonds |
title_sort |
theoretical study of intramolecular interactions in peri-substituted naphthalenes: chalcogen and hydrogen bonds |
publisher |
MDPI AG |
series |
Molecules |
issn |
1420-3049 |
publishDate |
2017-02-01 |
description |
A theoretical study of the peri interactions, both intramolecular hydrogen (HB) and chalcogen bonds (YB), in 1-hydroxy-8YH-naphthalene, 1,4-dihydroxy-5,8-di-YH-naphthalene, and 1,5-dihydroxy-4,8-di-YH-naphthalene, with Y = O, S, and Se was carried out. The systems with a OH:Y hydrogen bond are the most stable ones followed by those with a chalcogen O:Y interaction, those with a YH:O hydrogen bond (Y = S and Se) being the least stable ones. The electron density values at the hydrogen bond critical points indicate that they have partial covalent character. Natural Bond Orbital (NBO) analysis shows stabilization due to the charge transfer between lone pair orbitals towards empty Y-H that correlate with the interatomic distances. The electron density shift maps and non-covalent indexes in the different systems are consistent with the relative strength of the interactions. The structures found on the CSD were used to compare the experimental and calculated results. |
topic |
chalcogen bonds non-covalent interactions MP2 interaction energy intramolecular interactions hydrogen bonds |
url |
http://www.mdpi.com/1420-3049/22/2/227 |
work_keys_str_mv |
AT goarsanchezsanz theoreticalstudyofintramolecularinteractionsinperisubstitutednaphthaleneschalcogenandhydrogenbonds AT ibonalkorta theoreticalstudyofintramolecularinteractionsinperisubstitutednaphthaleneschalcogenandhydrogenbonds AT joseelguero theoreticalstudyofintramolecularinteractionsinperisubstitutednaphthaleneschalcogenandhydrogenbonds |
_version_ |
1725656719618473984 |