LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and Long...

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Bibliographic Details
Main Authors: Yoshinori Fukasawa, Luca Ermini, Hai Wang, Karen Carty, Min-Sin Cheung
Format: Article
Language:English
Published: Oxford University Press 2020-04-01
Series:G3: Genes, Genomes, Genetics
Subjects:
quality control
long read
third generation sequencers
pacbio
oxford nanopore
Online Access:http://g3journal.org/lookup/doi/10.1534/g3.119.400864

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