LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and Long...

Full description

Bibliographic Details
Main Authors:	Yoshinori Fukasawa, Luca Ermini, Hai Wang, Karen Carty, Min-Sin Cheung
Format:	Article
Language:	English
Published:	Oxford University Press 2020-04-01
Series:	G3: Genes, Genomes, Genetics
Subjects:	quality control long read third generation sequencers pacbio oxford nanopore
Online Access:	http://g3journal.org/lookup/doi/10.1534/g3.119.400864

id	doaj-db62b26bfbb54048816bd5901269e37a
record_format	Article
spelling	doaj-db62b26bfbb54048816bd5901269e37a2021-07-02T10:35:56ZengOxford University PressG3: Genes, Genomes, Genetics2160-18362020-04-011041193119610.1534/g3.119.4008646LongQC: A Quality Control Tool for Third Generation Sequencing Long Read DataYoshinori FukasawaLuca ErminiHai WangKaren CartyMin-Sin CheungWe propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.http://g3journal.org/lookup/doi/10.1534/g3.119.400864quality controllong readthird generation sequencerspacbiooxford nanopore
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Yoshinori Fukasawa Luca Ermini Hai Wang Karen Carty Min-Sin Cheung
spellingShingle	Yoshinori Fukasawa Luca Ermini Hai Wang Karen Carty Min-Sin Cheung LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data G3: Genes, Genomes, Genetics quality control long read third generation sequencers pacbio oxford nanopore
author_facet	Yoshinori Fukasawa Luca Ermini Hai Wang Karen Carty Min-Sin Cheung
author_sort	Yoshinori Fukasawa
title	LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_short	LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_full	LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_fullStr	LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_full_unstemmed	LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_sort	longqc: a quality control tool for third generation sequencing long read data
publisher	Oxford University Press
series	G3: Genes, Genomes, Genetics
issn	2160-1836
publishDate	2020-04-01
description	We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.
topic	quality control long read third generation sequencers pacbio oxford nanopore
url	http://g3journal.org/lookup/doi/10.1534/g3.119.400864
work_keys_str_mv	AT yoshinorifukasawa longqcaqualitycontroltoolforthirdgenerationsequencinglongreaddata AT lucaermini longqcaqualitycontroltoolforthirdgenerationsequencinglongreaddata AT haiwang longqcaqualitycontroltoolforthirdgenerationsequencinglongreaddata AT karencarty longqcaqualitycontroltoolforthirdgenerationsequencinglongreaddata AT minsincheung longqcaqualitycontroltoolforthirdgenerationsequencinglongreaddata
_version_	1721331947937988608

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

Similar Items