Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors

Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors

WRKY transcription factors are known to function in a number of plant processes. Here we have characterized 15 WRKY family genes of the important ornamental species chrysanthemum (Chrysanthemum morifolium). A total of 15 distinct sequences were isolated; initially internal fragments were amplified b...

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Main Authors: Aiping Song, Peiling Li, Jiafu Jiang, Sumei Chen, Huiyun Li, Jun Zeng, Yafeng Shao, Lu Zhu, Zhaohe Zhang, Fadi Chen
Format: Article
Language:English
Published: MDPI AG 2014-08-01
Series:International Journal of Molecular Sciences
Subjects:
Chrysanthemum morifolium
phylogenetic analysis
stress response
transcription pattern
Online Access:http://www.mdpi.com/1422-0067/15/8/14442
id doaj-d99e95da70a94b3a82c941747a8bbef6
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spelling doaj-d99e95da70a94b3a82c941747a8bbef62020-11-24T21:18:33ZengMDPI AGInternational Journal of Molecular Sciences1422-00672014-08-01158144421445510.3390/ijms150814442ijms150814442Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription FactorsAiping Song0Peiling Li1Jiafu Jiang2Sumei Chen3Huiyun Li4Jun Zeng5Yafeng Shao6Lu Zhu7Zhaohe Zhang8Fadi Chen9College of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, ChinaWRKY transcription factors are known to function in a number of plant processes. Here we have characterized 15 WRKY family genes of the important ornamental species chrysanthemum (Chrysanthemum morifolium). A total of 15 distinct sequences were isolated; initially internal fragments were amplified based on transcriptomic sequence, and then the full length cDNAs were obtained using RACE (rapid amplification of cDNA ends) PCR. The transcription of these 15 genes in response to a variety of phytohormone treatments and both biotic and abiotic stresses was characterized. Some of the genes behaved as would be predicted based on their homology with Arabidopsis thaliana WRKY genes, but others showed divergent behavior.http://www.mdpi.com/1422-0067/15/8/14442Chrysanthemum morifoliumphylogenetic analysisstress responsetranscription pattern
collection DOAJ
language English
format Article
sources DOAJ
author Aiping Song
Peiling Li
Jiafu Jiang
Sumei Chen
Huiyun Li
Jun Zeng
Yafeng Shao
Lu Zhu
Zhaohe Zhang
Fadi Chen
spellingShingle Aiping Song
Peiling Li
Jiafu Jiang
Sumei Chen
Huiyun Li
Jun Zeng
Yafeng Shao
Lu Zhu
Zhaohe Zhang
Fadi Chen
Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
International Journal of Molecular Sciences
Chrysanthemum morifolium
phylogenetic analysis
stress response
transcription pattern
author_facet Aiping Song
Peiling Li
Jiafu Jiang
Sumei Chen
Huiyun Li
Jun Zeng
Yafeng Shao
Lu Zhu
Zhaohe Zhang
Fadi Chen
author_sort Aiping Song
title Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
title_short Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
title_full Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
title_fullStr Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
title_full_unstemmed Phylogenetic and Transcription Analysis of Chrysanthemum WRKY Transcription Factors
title_sort phylogenetic and transcription analysis of chrysanthemum wrky transcription factors
publisher MDPI AG
series International Journal of Molecular Sciences
issn 1422-0067
publishDate 2014-08-01
description WRKY transcription factors are known to function in a number of plant processes. Here we have characterized 15 WRKY family genes of the important ornamental species chrysanthemum (Chrysanthemum morifolium). A total of 15 distinct sequences were isolated; initially internal fragments were amplified based on transcriptomic sequence, and then the full length cDNAs were obtained using RACE (rapid amplification of cDNA ends) PCR. The transcription of these 15 genes in response to a variety of phytohormone treatments and both biotic and abiotic stresses was characterized. Some of the genes behaved as would be predicted based on their homology with Arabidopsis thaliana WRKY genes, but others showed divergent behavior.
topic Chrysanthemum morifolium
phylogenetic analysis
stress response
transcription pattern
url http://www.mdpi.com/1422-0067/15/8/14442
work_keys_str_mv AT aipingsong phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT peilingli phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT jiafujiang phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT sumeichen phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT huiyunli phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT junzeng phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT yafengshao phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT luzhu phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT zhaohezhang phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
AT fadichen phylogeneticandtranscriptionanalysisofchrysanthemumwrkytranscriptionfactors
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