A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction

In the present work, a pair of primers specific to Tomato yellow leaf curl virus (TYLCV) was designed to allow specific amplification of DNA fragments from any TYLCV isolates using an extensive alignment of the complete genome sequences of TYLCV isolates deposited in the GenBank database. A pair of...

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Main Authors: Ju-Yoon Yeon, Gug-Seoun Choi, Seung-Kook Choi, Su Kim
Format: Article
Language:English
Published: Hanrimwon Publishing Company 2015-09-01
Series:Research in Plant Disease
Subjects:
Online Access:http://www.online-rpd.org/journal/view.html?uid=1451&&vmd=Full
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spelling doaj-d928252d7e6f47a596e5b75be66e43b92020-11-24T23:54:15ZengHanrimwon Publishing CompanyResearch in Plant Disease1598-22622233-91912015-09-01213180185http://dx.doi.org/10.5423/RPD.2015.21.3.180A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA ExtractionJu-Yoon Yeon0 Gug-Seoun Choi1 Seung-Kook Choi2 Su Kim3 Rural Development Administration, Wanju 565-862, Korea Rural Development Administration, Wanju 565-862, Korea Rural Development Administration, Wanju 565-862, Korea Rural Development Administration, Wanju 565-862, KoreaIn the present work, a pair of primers specific to Tomato yellow leaf curl virus (TYLCV) was designed to allow specific amplification of DNA fragments from any TYLCV isolates using an extensive alignment of the complete genome sequences of TYLCV isolates deposited in the GenBank database. A pair of primers which allows the specific amplification of tomato β-tubulin gene was also analyzed as an internal PCR control. A duplex PCR method with the developed primer sets showed that TYLCV could be directly detected from the leaf crude sap of infected tomato plants. In addition, our developed duplex PCR method could determine PCR errors for TYLCV diagnosis, suggesting that this duplex PCR method with the primer sets is a good tool for specific and sensitive TYLCV diagnosis. The developed duplex PCR method was further verified from tomato samples collected from some farms in Korea, suggesting that this developed PCR method is a simple and reliable tool for rapid and large-scale TYLCV detections in tomato plants. http://www.online-rpd.org/journal/view.html?uid=1451&&vmd=FullDetectionDuplex PCRInternal ControlTomato
collection DOAJ
language English
format Article
sources DOAJ
author Ju-Yoon Yeon
Gug-Seoun Choi
Seung-Kook Choi
Su Kim
spellingShingle Ju-Yoon Yeon
Gug-Seoun Choi
Seung-Kook Choi
Su Kim
A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
Research in Plant Disease
Detection
Duplex PCR
Internal Control
Tomato
author_facet Ju-Yoon Yeon
Gug-Seoun Choi
Seung-Kook Choi
Su Kim
author_sort Ju-Yoon Yeon
title A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
title_short A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
title_full A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
title_fullStr A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
title_full_unstemmed A Simple and Reliable Molecular Detection Method for Tomato yellow leaf curl virus in Solanum lycopersicum without DNA Extraction
title_sort simple and reliable molecular detection method for tomato yellow leaf curl virus in solanum lycopersicum without dna extraction
publisher Hanrimwon Publishing Company
series Research in Plant Disease
issn 1598-2262
2233-9191
publishDate 2015-09-01
description In the present work, a pair of primers specific to Tomato yellow leaf curl virus (TYLCV) was designed to allow specific amplification of DNA fragments from any TYLCV isolates using an extensive alignment of the complete genome sequences of TYLCV isolates deposited in the GenBank database. A pair of primers which allows the specific amplification of tomato β-tubulin gene was also analyzed as an internal PCR control. A duplex PCR method with the developed primer sets showed that TYLCV could be directly detected from the leaf crude sap of infected tomato plants. In addition, our developed duplex PCR method could determine PCR errors for TYLCV diagnosis, suggesting that this duplex PCR method with the primer sets is a good tool for specific and sensitive TYLCV diagnosis. The developed duplex PCR method was further verified from tomato samples collected from some farms in Korea, suggesting that this developed PCR method is a simple and reliable tool for rapid and large-scale TYLCV detections in tomato plants.
topic Detection
Duplex PCR
Internal Control
Tomato
url http://www.online-rpd.org/journal/view.html?uid=1451&&vmd=Full
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