Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery

The 2018–2019 Central European drought had a grave impact on natural and managed ecosystems, affecting their health and productivity. We examined patterns in hyperspectral VNIR imagery using an unsupervised learning approach to improve ecosystem monitoring and the understanding of grassland drought...

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Main Authors: Floris Hermanns, Felix Pohl, Corinna Rebmann, Gundula Schulz, Ulrike Werban, Angela Lausch
Format: Article
Language:English
Published: MDPI AG 2021-05-01
Series:Remote Sensing
Subjects:
Online Access:https://www.mdpi.com/2072-4292/13/10/1885
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spelling doaj-d71854ed87a04a11bb2a21d8d79dcd032021-05-31T23:44:21ZengMDPI AGRemote Sensing2072-42922021-05-01131885188510.3390/rs13101885Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR ImageryFloris Hermanns0Felix Pohl1Corinna Rebmann2Gundula Schulz3Ulrike Werban4Angela Lausch5Helmholtz Center for Environmental Research—UFZ, Department of Computational Landscape Ecology, Permoserstr. 15, 04318 Leipzig, GermanyHelmholtz Center for Environmental Research—UFZ, Department of Computational Hydrosystems, Permoserstr. 15, 04318 Leipzig, GermanyHelmholtz Center for Environmental Research—UFZ, Department of Computational Hydrosystems, Permoserstr. 15, 04318 Leipzig, GermanyHelmholtz Center for Environmental Research—UFZ, Department of Remote Sensing, Permoserstr. 15, 04318 Leipzig, GermanyHelmholtz Center for Environmental Research—UFZ, Department of Monitoring and Exploration Technologies, Permoserstr. 15, 04318 Leipzig, GermanyHelmholtz Center for Environmental Research—UFZ, Department of Computational Landscape Ecology, Permoserstr. 15, 04318 Leipzig, GermanyThe 2018–2019 Central European drought had a grave impact on natural and managed ecosystems, affecting their health and productivity. We examined patterns in hyperspectral VNIR imagery using an unsupervised learning approach to improve ecosystem monitoring and the understanding of grassland drought responses. The main objectives of this study were (1) to evaluate the application of simplex volume maximisation (SiVM), an unsupervised learning method, for the detection of grassland drought stress in high-dimensional remote sensing data at the ecosystem scale and (2) to analyse the contributions of different spectral plant and soil traits to the computed stress signal. The drought status of the research site was assessed with a non-parametric standardised precipitation–evapotranspiration index (SPEI) and soil moisture measurements. We used airborne HySpex VNIR-1800 data from spring 2018 and 2019 to compare vegetation condition at the onset of the drought with the state after one year. SiVM, an interpretable matrix factorisation technique, was used to derive typical extreme spectra (archetypes) from the hyperspectral data. The classification of archetypes allowed for the inference of qualitative drought stress levels. The results were evaluated using a set of geophysical measurements and vegetation indices as proxy variables for drought-inhibited vegetation growth. The successful application of SiVM for grassland stress detection at the ecosystem canopy scale was verified in a correlation analysis. The predictor importance was assessed with boosted beta regression. In the resulting interannual stress model, carotenoid-related variables had among the highest coefficient values. The significance of the photochemical reflectance index that uses 512 nm as reference wavelength (PRI<sub>512</sub>) demonstrates the value of combining imaging spectrometry and unsupervised learning for the monitoring of vegetation stress. It also shows the potential of archetypical reflectance spectra to be used for the remote estimation of photosynthetic efficiency. More conclusive results could be achieved by using vegetation measurements instead of proxy variables for evaluation. It must also be investigated how the method can be generalised across ecosystems.https://www.mdpi.com/2072-4292/13/10/1885vegetation stress detectionunsupervised machine learningdroughthyperspectral VNIR datamonitoring solutionsphotochemical reflectance index
collection DOAJ
language English
format Article
sources DOAJ
author Floris Hermanns
Felix Pohl
Corinna Rebmann
Gundula Schulz
Ulrike Werban
Angela Lausch
spellingShingle Floris Hermanns
Felix Pohl
Corinna Rebmann
Gundula Schulz
Ulrike Werban
Angela Lausch
Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
Remote Sensing
vegetation stress detection
unsupervised machine learning
drought
hyperspectral VNIR data
monitoring solutions
photochemical reflectance index
author_facet Floris Hermanns
Felix Pohl
Corinna Rebmann
Gundula Schulz
Ulrike Werban
Angela Lausch
author_sort Floris Hermanns
title Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
title_short Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
title_full Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
title_fullStr Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
title_full_unstemmed Inferring Grassland Drought Stress with Unsupervised Learning from Airborne Hyperspectral VNIR Imagery
title_sort inferring grassland drought stress with unsupervised learning from airborne hyperspectral vnir imagery
publisher MDPI AG
series Remote Sensing
issn 2072-4292
publishDate 2021-05-01
description The 2018–2019 Central European drought had a grave impact on natural and managed ecosystems, affecting their health and productivity. We examined patterns in hyperspectral VNIR imagery using an unsupervised learning approach to improve ecosystem monitoring and the understanding of grassland drought responses. The main objectives of this study were (1) to evaluate the application of simplex volume maximisation (SiVM), an unsupervised learning method, for the detection of grassland drought stress in high-dimensional remote sensing data at the ecosystem scale and (2) to analyse the contributions of different spectral plant and soil traits to the computed stress signal. The drought status of the research site was assessed with a non-parametric standardised precipitation–evapotranspiration index (SPEI) and soil moisture measurements. We used airborne HySpex VNIR-1800 data from spring 2018 and 2019 to compare vegetation condition at the onset of the drought with the state after one year. SiVM, an interpretable matrix factorisation technique, was used to derive typical extreme spectra (archetypes) from the hyperspectral data. The classification of archetypes allowed for the inference of qualitative drought stress levels. The results were evaluated using a set of geophysical measurements and vegetation indices as proxy variables for drought-inhibited vegetation growth. The successful application of SiVM for grassland stress detection at the ecosystem canopy scale was verified in a correlation analysis. The predictor importance was assessed with boosted beta regression. In the resulting interannual stress model, carotenoid-related variables had among the highest coefficient values. The significance of the photochemical reflectance index that uses 512 nm as reference wavelength (PRI<sub>512</sub>) demonstrates the value of combining imaging spectrometry and unsupervised learning for the monitoring of vegetation stress. It also shows the potential of archetypical reflectance spectra to be used for the remote estimation of photosynthetic efficiency. More conclusive results could be achieved by using vegetation measurements instead of proxy variables for evaluation. It must also be investigated how the method can be generalised across ecosystems.
topic vegetation stress detection
unsupervised machine learning
drought
hyperspectral VNIR data
monitoring solutions
photochemical reflectance index
url https://www.mdpi.com/2072-4292/13/10/1885
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