State-dependent geometry of population activity in rat auditory cortex

The accuracy of the neural code depends on the relative embedding of signal and noise in the activity of neural populations. Despite a wealth of theoretical work on population codes, there are few empirical characterizations of the high-dimensional signal and noise subspaces. We studied the geometry...

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Main Authors: Dmitry Kobak, Jose L Pardo-Vazquez, Mafalda Valente, Christian K Machens, Alfonso Renart
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2019-04-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/44526
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spelling doaj-d4513e583d6148e0a300f22cc8b2c7882021-05-05T17:32:01ZengeLife Sciences Publications LtdeLife2050-084X2019-04-01810.7554/eLife.44526State-dependent geometry of population activity in rat auditory cortexDmitry Kobak0https://orcid.org/0000-0002-5639-7209Jose L Pardo-Vazquez1https://orcid.org/0000-0003-4623-2440Mafalda Valente2https://orcid.org/0000-0002-1824-0462Christian K Machens3https://orcid.org/0000-0003-1717-1562Alfonso Renart4https://orcid.org/0000-0001-7916-9930Champalimaud Center for the Unknown, Lisbon, Portugal; Institute for Ophthalmic Research, University of Tübingen, Tübingen, GermanyChampalimaud Center for the Unknown, Lisbon, Portugal; Neuroscience and Motor Control Group, University of A Coruña, Coruña, SpainChampalimaud Center for the Unknown, Lisbon, PortugalChampalimaud Center for the Unknown, Lisbon, PortugalChampalimaud Center for the Unknown, Lisbon, PortugalThe accuracy of the neural code depends on the relative embedding of signal and noise in the activity of neural populations. Despite a wealth of theoretical work on population codes, there are few empirical characterizations of the high-dimensional signal and noise subspaces. We studied the geometry of population codes in the rat auditory cortex across brain states along the activation-inactivation continuum, using sounds varying in difference and mean level across the ears. As the cortex becomes more activated, single-hemisphere populations go from preferring contralateral loud sounds to a symmetric preference across lateralizations and intensities, gain-modulation effectively disappears, and the signal and noise subspaces become approximately orthogonal to each other and to the direction corresponding to global activity modulations. Level-invariant decoding of sound lateralization also becomes possible in the active state. Our results provide an empirical foundation for the geometry and state-dependence of cortical population codes.https://elifesciences.org/articles/44526auditory cortexpopulation activitycortical state
collection DOAJ
language English
format Article
sources DOAJ
author Dmitry Kobak
Jose L Pardo-Vazquez
Mafalda Valente
Christian K Machens
Alfonso Renart
spellingShingle Dmitry Kobak
Jose L Pardo-Vazquez
Mafalda Valente
Christian K Machens
Alfonso Renart
State-dependent geometry of population activity in rat auditory cortex
eLife
auditory cortex
population activity
cortical state
author_facet Dmitry Kobak
Jose L Pardo-Vazquez
Mafalda Valente
Christian K Machens
Alfonso Renart
author_sort Dmitry Kobak
title State-dependent geometry of population activity in rat auditory cortex
title_short State-dependent geometry of population activity in rat auditory cortex
title_full State-dependent geometry of population activity in rat auditory cortex
title_fullStr State-dependent geometry of population activity in rat auditory cortex
title_full_unstemmed State-dependent geometry of population activity in rat auditory cortex
title_sort state-dependent geometry of population activity in rat auditory cortex
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2019-04-01
description The accuracy of the neural code depends on the relative embedding of signal and noise in the activity of neural populations. Despite a wealth of theoretical work on population codes, there are few empirical characterizations of the high-dimensional signal and noise subspaces. We studied the geometry of population codes in the rat auditory cortex across brain states along the activation-inactivation continuum, using sounds varying in difference and mean level across the ears. As the cortex becomes more activated, single-hemisphere populations go from preferring contralateral loud sounds to a symmetric preference across lateralizations and intensities, gain-modulation effectively disappears, and the signal and noise subspaces become approximately orthogonal to each other and to the direction corresponding to global activity modulations. Level-invariant decoding of sound lateralization also becomes possible in the active state. Our results provide an empirical foundation for the geometry and state-dependence of cortical population codes.
topic auditory cortex
population activity
cortical state
url https://elifesciences.org/articles/44526
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