A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

Using variants from the 1000 Genomes Project, RNA-seq and ChIP-seq data from related projects, this study describes a resource and survey of allele-specific binding and gene expression. A catalogue of allelic SNPs and annotation elements is available as an online resource at alleledb.gersteinlab.org...

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Main Authors: Jieming Chen, Joel Rozowsky, Timur R. Galeev, Arif Harmanci, Robert Kitchen, Jason Bedford, Alexej Abyzov, Yong Kong, Lynne Regan, Mark Gerstein
Format: Article
Language:English
Published: Nature Publishing Group 2016-04-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/ncomms11101
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spelling doaj-d440bca1c75048d0a733a3fb0a6a9ba52021-05-11T11:11:32ZengNature Publishing GroupNature Communications2041-17232016-04-017111310.1038/ncomms11101A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individualsJieming Chen0Joel Rozowsky1Timur R. Galeev2Arif Harmanci3Robert Kitchen4Jason Bedford5Alexej Abyzov6Yong Kong7Lynne Regan8Mark Gerstein9Program in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityDepartment of Computer Science, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityProgram in Computational Biology and Bioinformatics, Yale UniversityUsing variants from the 1000 Genomes Project, RNA-seq and ChIP-seq data from related projects, this study describes a resource and survey of allele-specific binding and gene expression. A catalogue of allelic SNPs and annotation elements is available as an online resource at alleledb.gersteinlab.org.https://doi.org/10.1038/ncomms11101
collection DOAJ
language English
format Article
sources DOAJ
author Jieming Chen
Joel Rozowsky
Timur R. Galeev
Arif Harmanci
Robert Kitchen
Jason Bedford
Alexej Abyzov
Yong Kong
Lynne Regan
Mark Gerstein
spellingShingle Jieming Chen
Joel Rozowsky
Timur R. Galeev
Arif Harmanci
Robert Kitchen
Jason Bedford
Alexej Abyzov
Yong Kong
Lynne Regan
Mark Gerstein
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
Nature Communications
author_facet Jieming Chen
Joel Rozowsky
Timur R. Galeev
Arif Harmanci
Robert Kitchen
Jason Bedford
Alexej Abyzov
Yong Kong
Lynne Regan
Mark Gerstein
author_sort Jieming Chen
title A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
title_short A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
title_full A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
title_fullStr A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
title_full_unstemmed A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
title_sort uniform survey of allele-specific binding and expression over 1000-genomes-project individuals
publisher Nature Publishing Group
series Nature Communications
issn 2041-1723
publishDate 2016-04-01
description Using variants from the 1000 Genomes Project, RNA-seq and ChIP-seq data from related projects, this study describes a resource and survey of allele-specific binding and gene expression. A catalogue of allelic SNPs and annotation elements is available as an online resource at alleledb.gersteinlab.org.
url https://doi.org/10.1038/ncomms11101
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