Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution

Lysozyme is widely used as a model protein in studies of structure–function relationships. Recently, lysozyme has gained attention for use in accelerating the degradation of secondary sludge, which mainly consists of bacteria. However, a high-throughput screening system for lysozyme engineering has...

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Main Authors: Seung-Gyun Woo, Seong Keun Kim, Baek-Rock Oh, Seung-Goo Lee, Dae-Hee Lee
Format: Article
Language:English
Published: MDPI AG 2020-11-01
Series:International Journal of Molecular Sciences
Subjects:
Online Access:https://www.mdpi.com/1422-0067/21/22/8668
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spelling doaj-d41ad7ac56824548893512f2efd6c4732020-11-25T04:08:22ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672020-11-01218668866810.3390/ijms21228668Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme EvolutionSeung-Gyun Woo0Seong Keun Kim1Baek-Rock Oh2Seung-Goo Lee3Dae-Hee Lee4Synthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, KoreaSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, KoreaMicrobial Biotechnology Research Center, Jeonbuk Branch Institute, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup 56212, KoreaSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, KoreaSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, KoreaLysozyme is widely used as a model protein in studies of structure–function relationships. Recently, lysozyme has gained attention for use in accelerating the degradation of secondary sludge, which mainly consists of bacteria. However, a high-throughput screening system for lysozyme engineering has not been reported. Here, we present a lysozyme screening system using a genetically encoded biosensor. We first cloned bacteriophage T4 lysozyme (T4L) into a plasmid under control of the <i>araBAD</i> promoter. The plasmid was expressed in <i>Escherichia coli</i> with no toxic effects on growth. Next, we observed that increased soluble T4L expression decreased the fluorescence produced by the genetic enzyme screening system. To investigate T4L evolution based on this finding, we generated a T4L random mutation library, which was screened using the genetic enzyme screening system. Finally, we identified two T4L variants showing 1.4-fold enhanced lytic activity compared to native T4L. To our knowledge, this is the first report describing the use of a genetically encoded biosensor to investigate bacteriophage T4L evolution. Our approach can be used to investigate the evolution of other lysozymes, which will expand the applications of lysozyme.https://www.mdpi.com/1422-0067/21/22/8668bacteriophage T4 lysozymegenetically encoded biosensordirected evolution
collection DOAJ
language English
format Article
sources DOAJ
author Seung-Gyun Woo
Seong Keun Kim
Baek-Rock Oh
Seung-Goo Lee
Dae-Hee Lee
spellingShingle Seung-Gyun Woo
Seong Keun Kim
Baek-Rock Oh
Seung-Goo Lee
Dae-Hee Lee
Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
International Journal of Molecular Sciences
bacteriophage T4 lysozyme
genetically encoded biosensor
directed evolution
author_facet Seung-Gyun Woo
Seong Keun Kim
Baek-Rock Oh
Seung-Goo Lee
Dae-Hee Lee
author_sort Seung-Gyun Woo
title Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
title_short Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
title_full Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
title_fullStr Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
title_full_unstemmed Genetically Encoded Biosensor-Based Screening for Directed Bacteriophage T4 Lysozyme Evolution
title_sort genetically encoded biosensor-based screening for directed bacteriophage t4 lysozyme evolution
publisher MDPI AG
series International Journal of Molecular Sciences
issn 1661-6596
1422-0067
publishDate 2020-11-01
description Lysozyme is widely used as a model protein in studies of structure–function relationships. Recently, lysozyme has gained attention for use in accelerating the degradation of secondary sludge, which mainly consists of bacteria. However, a high-throughput screening system for lysozyme engineering has not been reported. Here, we present a lysozyme screening system using a genetically encoded biosensor. We first cloned bacteriophage T4 lysozyme (T4L) into a plasmid under control of the <i>araBAD</i> promoter. The plasmid was expressed in <i>Escherichia coli</i> with no toxic effects on growth. Next, we observed that increased soluble T4L expression decreased the fluorescence produced by the genetic enzyme screening system. To investigate T4L evolution based on this finding, we generated a T4L random mutation library, which was screened using the genetic enzyme screening system. Finally, we identified two T4L variants showing 1.4-fold enhanced lytic activity compared to native T4L. To our knowledge, this is the first report describing the use of a genetically encoded biosensor to investigate bacteriophage T4L evolution. Our approach can be used to investigate the evolution of other lysozymes, which will expand the applications of lysozyme.
topic bacteriophage T4 lysozyme
genetically encoded biosensor
directed evolution
url https://www.mdpi.com/1422-0067/21/22/8668
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AT seongkeunkim geneticallyencodedbiosensorbasedscreeningfordirectedbacteriophaget4lysozymeevolution
AT baekrockoh geneticallyencodedbiosensorbasedscreeningfordirectedbacteriophaget4lysozymeevolution
AT seunggoolee geneticallyencodedbiosensorbasedscreeningfordirectedbacteriophaget4lysozymeevolution
AT daeheelee geneticallyencodedbiosensorbasedscreeningfordirectedbacteriophaget4lysozymeevolution
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