Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes

Abstract Objectives Bacillus species, belonging to the family Bacillaceae, are rod-shaped aerobic or facultative anaerobic Gram-positive bacteria that can be isolated from various environmental niches. Bacillus pumilus strains are resistant to unfavorable conditions such as UV, H2O2 and chemical dis...

Full description

Bibliographic Details
Main Authors: Elvira E. Ziganshina, Waleed S. Mohammed, Elena I. Shagimardanova, Leyla H. Shigapova, Ayrat M. Ziganshin
Format: Article
Language:English
Published: BMC 2018-08-01
Series:BMC Research Notes
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13104-018-3710-1
id doaj-d197845a21e94c4aad8d82cd59773960
record_format Article
spelling doaj-d197845a21e94c4aad8d82cd597739602020-11-25T02:28:16ZengBMCBMC Research Notes1756-05002018-08-011111310.1186/s13104-018-3710-1Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastesElvira E. Ziganshina0Waleed S. Mohammed1Elena I. Shagimardanova2Leyla H. Shigapova3Ayrat M. Ziganshin4Department of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal UniversityDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal UniversityLaboratory of Extreme Biology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal UniversityLaboratory of Extreme Biology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal UniversityDepartment of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal UniversityAbstract Objectives Bacillus species, belonging to the family Bacillaceae, are rod-shaped aerobic or facultative anaerobic Gram-positive bacteria that can be isolated from various environmental niches. Bacillus pumilus strains are resistant to unfavorable conditions such as UV, H2O2 and chemical disinfection. Furthermore, B. pumilus strains synthesize multifarious important enzymes and can be used in the production of some fermented foods, bioremediation of wastewater systems and biodegradation of environmental contaminants. Hence, investigation at the genomic level is required to understand their ecology, genetics and potential applications. Data description In this research, we provide the genomic insights into one Bacillus species (EZ-C07) isolated from digested agricultural waste materials. The draft genome of the strain EZ-C07 consists of 3,724,869 bp with 3890 coding sequences and 41.5% G + C content. Based on 16S rRNA gene sequence analysis followed by in silico DNA–DNA hybridization studies, the strain EZ-C07 was identified as Bacillus pumilus belonging to the family Bacillaceae within the phylum Firmicutes. The whole genome shotgun project of B. pumilus strain EZ-C07 can be accessed at DDBJ/ENA/GenBank under the Accession QLVI00000000.http://link.springer.com/article/10.1186/s13104-018-3710-1Poultry manureBioreactorGenome sequencingFirmicutesBacillus pumilus
collection DOAJ
language English
format Article
sources DOAJ
author Elvira E. Ziganshina
Waleed S. Mohammed
Elena I. Shagimardanova
Leyla H. Shigapova
Ayrat M. Ziganshin
spellingShingle Elvira E. Ziganshina
Waleed S. Mohammed
Elena I. Shagimardanova
Leyla H. Shigapova
Ayrat M. Ziganshin
Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
BMC Research Notes
Poultry manure
Bioreactor
Genome sequencing
Firmicutes
Bacillus pumilus
author_facet Elvira E. Ziganshina
Waleed S. Mohammed
Elena I. Shagimardanova
Leyla H. Shigapova
Ayrat M. Ziganshin
author_sort Elvira E. Ziganshina
title Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
title_short Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
title_full Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
title_fullStr Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
title_full_unstemmed Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes
title_sort draft genome sequence of bacillus pumilus strain ez-c07 isolated from digested agricultural wastes
publisher BMC
series BMC Research Notes
issn 1756-0500
publishDate 2018-08-01
description Abstract Objectives Bacillus species, belonging to the family Bacillaceae, are rod-shaped aerobic or facultative anaerobic Gram-positive bacteria that can be isolated from various environmental niches. Bacillus pumilus strains are resistant to unfavorable conditions such as UV, H2O2 and chemical disinfection. Furthermore, B. pumilus strains synthesize multifarious important enzymes and can be used in the production of some fermented foods, bioremediation of wastewater systems and biodegradation of environmental contaminants. Hence, investigation at the genomic level is required to understand their ecology, genetics and potential applications. Data description In this research, we provide the genomic insights into one Bacillus species (EZ-C07) isolated from digested agricultural waste materials. The draft genome of the strain EZ-C07 consists of 3,724,869 bp with 3890 coding sequences and 41.5% G + C content. Based on 16S rRNA gene sequence analysis followed by in silico DNA–DNA hybridization studies, the strain EZ-C07 was identified as Bacillus pumilus belonging to the family Bacillaceae within the phylum Firmicutes. The whole genome shotgun project of B. pumilus strain EZ-C07 can be accessed at DDBJ/ENA/GenBank under the Accession QLVI00000000.
topic Poultry manure
Bioreactor
Genome sequencing
Firmicutes
Bacillus pumilus
url http://link.springer.com/article/10.1186/s13104-018-3710-1
work_keys_str_mv AT elviraeziganshina draftgenomesequenceofbacilluspumilusstrainezc07isolatedfromdigestedagriculturalwastes
AT waleedsmohammed draftgenomesequenceofbacilluspumilusstrainezc07isolatedfromdigestedagriculturalwastes
AT elenaishagimardanova draftgenomesequenceofbacilluspumilusstrainezc07isolatedfromdigestedagriculturalwastes
AT leylahshigapova draftgenomesequenceofbacilluspumilusstrainezc07isolatedfromdigestedagriculturalwastes
AT ayratmziganshin draftgenomesequenceofbacilluspumilusstrainezc07isolatedfromdigestedagriculturalwastes
_version_ 1724839359970017280