Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine

<p><i>Phragmites australis</i> litters were incubated in three waterlogged anoxic wetland soils of different nutrient status for 75&thinsp;<span class="inline-formula">d</span>, and litter nitrogen (N) dynamics were analyzed by elemental analyses and Fouri...

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Main Authors: H. Reuter, J. Gensel, M. Elvert, D. Zak
Format: Article
Language:English
Published: Copernicus Publications 2020-01-01
Series:Biogeosciences
Online Access:https://www.biogeosciences.net/17/499/2020/bg-17-499-2020.pdf
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spelling doaj-d1289c320026400e8ee755248fd54ac22020-11-25T02:11:02ZengCopernicus PublicationsBiogeosciences1726-41701726-41892020-01-011749951410.5194/bg-17-499-2020Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routineH. Reuter0J. Gensel1M. Elvert2D. Zak3Department of Chemical Analytics and Biogeochemistry, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, GermanyMARUM – Center for Marine Environmental Sciences and Faculty of Geosciences, University of Bremen, 28359 Bremen, GermanyMARUM – Center for Marine Environmental Sciences and Faculty of Geosciences, University of Bremen, 28359 Bremen, GermanyDepartment of Bioscience, University of Aarhus, 8600 Silkeborg, Denmark<p><i>Phragmites australis</i> litters were incubated in three waterlogged anoxic wetland soils of different nutrient status for 75&thinsp;<span class="inline-formula">d</span>, and litter nitrogen (N) dynamics were analyzed by elemental analyses and Fourier transform infrared spectroscopy (FTIR). At the end of the incubation time, the N content in the remaining litter tissue had increased in most samples. Yet, the increase in N content was less pronounced when litters had been decomposed in a more-N-poor environment. FTIR was used to quantify the relative content of proteins in litter tissue and revealed a highly linear relationship between bulk N content and protein content. Changes in bulk N content thus paralleled and probably were governed by changes in litter protein content. Such changes are the result of two competing processes within decomposing litter: enzymatic protein depolymerization as a part of the litter breakdown process and microbial protein synthesis as a part of microbial biomass growth within the litter. Assuming microbial homeostasis, DNA signals in FTIR spectra were used to calculate the amount of microbial N in decomposed litter which ranged from 14&thinsp;% to 42&thinsp;% of the total litter N for all leaf samples. Microbial carbon (C) content and resultant calculated carbon use efficiencies (CUEs) indicate that microbial N in litter accumulated according to predictions of the stoichiometric decomposition theory. Subtracting microbial C and N contributions from litter, however, revealed site-dependent variations in the percentual amount of the remaining still-unprocessed plant N in litter compared to remaining plant C, an indicator for preferential protein depolymerization. For all leaf litters, the coefficient of preferential protein depolymerization (<span class="inline-formula"><i>α</i></span>), which relates N-compound depolymerization to C-compound depolymerization, ranged from 0.74–0.88 in a nutrient-rich detritus mud to 1.38–1.82 in <i>Sphagnum</i> peat, the most nutrient-poor substrate in this experiment. Preferential protein depolymerization from litter decomposing in <i>Sphagnum</i> peat leads to a gradual N depletion in the early phase of litter decomposition, which we propose as a preservation mechanism for vascular litter in <i>Sphagnum</i> peatlands.</p>https://www.biogeosciences.net/17/499/2020/bg-17-499-2020.pdf
collection DOAJ
language English
format Article
sources DOAJ
author H. Reuter
J. Gensel
M. Elvert
D. Zak
spellingShingle H. Reuter
J. Gensel
M. Elvert
D. Zak
Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
Biogeosciences
author_facet H. Reuter
J. Gensel
M. Elvert
D. Zak
author_sort H. Reuter
title Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
title_short Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
title_full Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
title_fullStr Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
title_full_unstemmed Evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel FTIR routine
title_sort evidence for preferential protein depolymerization in wetland soils in response to external nitrogen availability provided by a novel ftir routine
publisher Copernicus Publications
series Biogeosciences
issn 1726-4170
1726-4189
publishDate 2020-01-01
description <p><i>Phragmites australis</i> litters were incubated in three waterlogged anoxic wetland soils of different nutrient status for 75&thinsp;<span class="inline-formula">d</span>, and litter nitrogen (N) dynamics were analyzed by elemental analyses and Fourier transform infrared spectroscopy (FTIR). At the end of the incubation time, the N content in the remaining litter tissue had increased in most samples. Yet, the increase in N content was less pronounced when litters had been decomposed in a more-N-poor environment. FTIR was used to quantify the relative content of proteins in litter tissue and revealed a highly linear relationship between bulk N content and protein content. Changes in bulk N content thus paralleled and probably were governed by changes in litter protein content. Such changes are the result of two competing processes within decomposing litter: enzymatic protein depolymerization as a part of the litter breakdown process and microbial protein synthesis as a part of microbial biomass growth within the litter. Assuming microbial homeostasis, DNA signals in FTIR spectra were used to calculate the amount of microbial N in decomposed litter which ranged from 14&thinsp;% to 42&thinsp;% of the total litter N for all leaf samples. Microbial carbon (C) content and resultant calculated carbon use efficiencies (CUEs) indicate that microbial N in litter accumulated according to predictions of the stoichiometric decomposition theory. Subtracting microbial C and N contributions from litter, however, revealed site-dependent variations in the percentual amount of the remaining still-unprocessed plant N in litter compared to remaining plant C, an indicator for preferential protein depolymerization. For all leaf litters, the coefficient of preferential protein depolymerization (<span class="inline-formula"><i>α</i></span>), which relates N-compound depolymerization to C-compound depolymerization, ranged from 0.74–0.88 in a nutrient-rich detritus mud to 1.38–1.82 in <i>Sphagnum</i> peat, the most nutrient-poor substrate in this experiment. Preferential protein depolymerization from litter decomposing in <i>Sphagnum</i> peat leads to a gradual N depletion in the early phase of litter decomposition, which we propose as a preservation mechanism for vascular litter in <i>Sphagnum</i> peatlands.</p>
url https://www.biogeosciences.net/17/499/2020/bg-17-499-2020.pdf
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