Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Abstract Background A popular strategy to study alternative splicing in non-model organisms starts from sequencing the entire transcriptome, then assembling the reads by using de novo transcriptome assembly algorithms to obtain predicted transcripts. A similarity search algorithm is then applied to...

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Bibliographic Details
Main Authors: Shuhua Fu, Peter L. Chang, Maren L. Friesen, Natasha L. Teakle, Aaron M. Tarone, Sing-Hoi Sze
Format: Article
Language:English
Published: BMC 2019-06-01
Series:BMC Genomics
Subjects:
de Bruijn graph
RNA-Seq
Melilotus
Online Access:http://link.springer.com/article/10.1186/s12864-019-5702-5

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