Integrative analysis of reference epigenomes in 20 rice varieties

Integrative analysis of reference epigenomes in 20 rice varieties

Comprehensive epigenomic maps of various rice varieties are still unavailable. Here, the authors report the development of eChIP as a fast and low-input upgrade of regular plant ChIP-seq protocol for epigenome analysis of 20 rice varieties and annotate over 80% of the genome with different epigenome...

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Main Authors: Lun Zhao, Liang Xie, Qing Zhang, Weizhi Ouyang, Li Deng, Pengpeng Guan, Meng Ma, Yue Li, Ying Zhang, Qin Xiao, Jingwen Zhang, Hongmeijuan Li, Shunyao Wang, Jiangwei Man, Zhilin Cao, Qinghua Zhang, Qifa Zhang, Guoliang Li, Xingwang Li
Format: Article
Language:English
Published: Nature Publishing Group 2020-05-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-020-16457-5
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spelling doaj-cd5c598cf09a4d0785dee2d29f0835f72021-05-30T11:16:10ZengNature Publishing GroupNature Communications2041-17232020-05-0111111610.1038/s41467-020-16457-5Integrative analysis of reference epigenomes in 20 rice varietiesLun Zhao0Liang Xie1Qing Zhang2Weizhi Ouyang3Li Deng4Pengpeng Guan5Meng Ma6Yue Li7Ying Zhang8Qin Xiao9Jingwen Zhang10Hongmeijuan Li11Shunyao Wang12Jiangwei Man13Zhilin Cao14Qinghua Zhang15Qifa Zhang16Guoliang Li17Xingwang Li18National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityComprehensive epigenomic maps of various rice varieties are still unavailable. Here, the authors report the development of eChIP as a fast and low-input upgrade of regular plant ChIP-seq protocol for epigenome analysis of 20 rice varieties and annotate over 80% of the genome with different epigenome properties for transcriptional regulation.https://doi.org/10.1038/s41467-020-16457-5
collection DOAJ
language English
format Article
sources DOAJ
author Lun Zhao
Liang Xie
Qing Zhang
Weizhi Ouyang
Li Deng
Pengpeng Guan
Meng Ma
Yue Li
Ying Zhang
Qin Xiao
Jingwen Zhang
Hongmeijuan Li
Shunyao Wang
Jiangwei Man
Zhilin Cao
Qinghua Zhang
Qifa Zhang
Guoliang Li
Xingwang Li
spellingShingle Lun Zhao
Liang Xie
Qing Zhang
Weizhi Ouyang
Li Deng
Pengpeng Guan
Meng Ma
Yue Li
Ying Zhang
Qin Xiao
Jingwen Zhang
Hongmeijuan Li
Shunyao Wang
Jiangwei Man
Zhilin Cao
Qinghua Zhang
Qifa Zhang
Guoliang Li
Xingwang Li
Integrative analysis of reference epigenomes in 20 rice varieties
Nature Communications
author_facet Lun Zhao
Liang Xie
Qing Zhang
Weizhi Ouyang
Li Deng
Pengpeng Guan
Meng Ma
Yue Li
Ying Zhang
Qin Xiao
Jingwen Zhang
Hongmeijuan Li
Shunyao Wang
Jiangwei Man
Zhilin Cao
Qinghua Zhang
Qifa Zhang
Guoliang Li
Xingwang Li
author_sort Lun Zhao
title Integrative analysis of reference epigenomes in 20 rice varieties
title_short Integrative analysis of reference epigenomes in 20 rice varieties
title_full Integrative analysis of reference epigenomes in 20 rice varieties
title_fullStr Integrative analysis of reference epigenomes in 20 rice varieties
title_full_unstemmed Integrative analysis of reference epigenomes in 20 rice varieties
title_sort integrative analysis of reference epigenomes in 20 rice varieties
publisher Nature Publishing Group
series Nature Communications
issn 2041-1723
publishDate 2020-05-01
description Comprehensive epigenomic maps of various rice varieties are still unavailable. Here, the authors report the development of eChIP as a fast and low-input upgrade of regular plant ChIP-seq protocol for epigenome analysis of 20 rice varieties and annotate over 80% of the genome with different epigenome properties for transcriptional regulation.
url https://doi.org/10.1038/s41467-020-16457-5
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