TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data
Abstract Background Strain-level RNA virus characterization is essential for developing prevention and treatment strategies. Viral metagenomic data, which can contain sequences of both known and novel viruses, provide new opportunities for characterizing RNA viruses. Although there are a number of p...
Main Authors: | Jiao Chen, Jiating Huang, Yanni Sun |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2019-06-01
|
Series: | BMC Bioinformatics |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s12859-019-2878-2 |
Similar Items
-
Computational Analysis of Viruses in Metagenomic Data
by: Tithi, Saima Sultana
Published: (2020) -
Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands
by: Joanna Warwick-Dugdale, et al.
Published: (2019-04-01) -
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
by: Simon Roux, et al.
Published: (2017-09-01) -
Reconstruction of bacterial and viral genomes from multiple metagenomes
by: Vineet K Sharma, et al.
Published: (2016-04-01) -
Assembly of viral genomes from metagenomes
by: Saskia L Smits, et al.
Published: (2014-12-01)