Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
Gene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to...
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Online Access: | http://dx.doi.org/10.1155/2020/8816633 |
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doaj-cc1bcf6769ec4407886322a19707805a2020-12-21T11:41:27ZengHindawi-WileyComplexity1076-27871099-05262020-01-01202010.1155/2020/88166338816633Analysis and Research of Key Genes in Gene Expression Network Based on Complex NetworkGuobin Chen0Jun Qi1Chao Tang2Ying Wang3Yongzhong Wu4Xiaolong Shi5Chongqing Key Laboratory of Spatial Data Mining and Big Data Integration for Ecology and Environment, Rongzhi College of Chongqing Technology and Business University, Chongqing 401320, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaGene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to analyze key genes and TOP genes. Firstly, gene chip data are screened, gene data with obvious characteristics are selected, and relevant clustering characteristics are analyzed. Then, the complex gene network structure is established, and gene networks with different threshold shapes and different sizes are selected. Finally, the relevant indexes and PR values after the PageRank algorithm are analyzed for complex networks under different thresholds, thus establishing the TOP gene and PR sequence.http://dx.doi.org/10.1155/2020/8816633 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Guobin Chen Jun Qi Chao Tang Ying Wang Yongzhong Wu Xiaolong Shi |
spellingShingle |
Guobin Chen Jun Qi Chao Tang Ying Wang Yongzhong Wu Xiaolong Shi Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network Complexity |
author_facet |
Guobin Chen Jun Qi Chao Tang Ying Wang Yongzhong Wu Xiaolong Shi |
author_sort |
Guobin Chen |
title |
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network |
title_short |
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network |
title_full |
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network |
title_fullStr |
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network |
title_full_unstemmed |
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network |
title_sort |
analysis and research of key genes in gene expression network based on complex network |
publisher |
Hindawi-Wiley |
series |
Complexity |
issn |
1076-2787 1099-0526 |
publishDate |
2020-01-01 |
description |
Gene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to analyze key genes and TOP genes. Firstly, gene chip data are screened, gene data with obvious characteristics are selected, and relevant clustering characteristics are analyzed. Then, the complex gene network structure is established, and gene networks with different threshold shapes and different sizes are selected. Finally, the relevant indexes and PR values after the PageRank algorithm are analyzed for complex networks under different thresholds, thus establishing the TOP gene and PR sequence. |
url |
http://dx.doi.org/10.1155/2020/8816633 |
work_keys_str_mv |
AT guobinchen analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork AT junqi analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork AT chaotang analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork AT yingwang analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork AT yongzhongwu analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork AT xiaolongshi analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork |
_version_ |
1714988536807030784 |