Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study

Chromosome 22q11.2 deletion syndrome (22q11.2DS) is a genetic neurodevelopmental syndrome that has been studied intensively in order to understand relationships between the genetic microdeletion, brain development, cognitive function, and the emergence of psychiatric symptoms. White matter microstru...

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Main Authors: Daniel S. Tylee, Zora Kikinis, Thomas P. Quinn, Kevin M. Antshel, Wanda Fremont, Muhammad A. Tahir, Anni Zhu, Xue Gong, Stephen J. Glatt, Ioana L. Coman, Martha E. Shenton, Wendy R. Kates, Nikos Makris
Format: Article
Language:English
Published: Elsevier 2017-01-01
Series:NeuroImage: Clinical
Online Access:http://www.sciencedirect.com/science/article/pii/S2213158217300785
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spelling doaj-cb3aa6b71cf44449a17b7e94312ce4eb2020-11-25T02:14:18ZengElsevierNeuroImage: Clinical2213-15822017-01-0115832842Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging studyDaniel S. Tylee0Zora Kikinis1Thomas P. Quinn2Kevin M. Antshel3Wanda Fremont4Muhammad A. Tahir5Anni Zhu6Xue Gong7Stephen J. Glatt8Ioana L. Coman9Martha E. Shenton10Wendy R. Kates11Nikos Makris12Department of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, NY, USA; Department of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USADepartment of Psychiatry, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USABioinformatics Core Research Group, Deakin University, Geelong, Victoria, AustraliaSyracuse University, Syracuse, NY, USADepartment of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USADepartment of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USADepartment of Psychiatry, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USADepartment of Psychiatry, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USADepartment of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, NY, USA; Department of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USADepartment of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USADepartment of Psychiatry, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA; Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA; VA Boston Healthcare System, Harvard Medical School, Brockton, MA, USADepartment of Psychiatry and Behavioral Sciences; SUNY Upstate Medical University, Syracuse, NY, USA; Corresponding author at: Department of Psychiatry, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA.Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA; Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USAChromosome 22q11.2 deletion syndrome (22q11.2DS) is a genetic neurodevelopmental syndrome that has been studied intensively in order to understand relationships between the genetic microdeletion, brain development, cognitive function, and the emergence of psychiatric symptoms. White matter microstructural abnormalities identified using diffusion tensor imaging methods have been reported to affect a variety of neuroanatomical tracts in 22q11.2DS. In the present study, we sought to combine two discovery-based approaches: (1) white matter query language was used to parcellate the brain's white matter into tracts connecting pairs of 34, bilateral cortical regions and (2) the diffusion imaging characteristics of the resulting tracts were analyzed using a machine-learning method called support vector machine in order to optimize the selection of a set of imaging features that maximally discriminated 22q11.2DS and comparison subjects. With this unique approach, we both confirmed previously-recognized 22q11.2DS-related abnormalities in the inferior longitudinal fasciculus (ILF), and identified, for the first time, 22q11.2DS-related anomalies in the middle longitudinal fascicle and the extreme capsule, which may have been overlooked in previous, hypothesis-guided studies. We further observed that, in participants with 22q11.2DS, ILF metrics were significantly associated with positive prodromal symptoms of psychosis. Keywords: 22q11.2 deletion syndrome, Velocardiofacial syndrome, Diffusion tensor imaging, White matter query language, Machine-learning, Support vector machine, Inferior longitudinal fasciculus, Middle longitudinal fascicle, Extreme capsule, Callosal asymmetryhttp://www.sciencedirect.com/science/article/pii/S2213158217300785
collection DOAJ
language English
format Article
sources DOAJ
author Daniel S. Tylee
Zora Kikinis
Thomas P. Quinn
Kevin M. Antshel
Wanda Fremont
Muhammad A. Tahir
Anni Zhu
Xue Gong
Stephen J. Glatt
Ioana L. Coman
Martha E. Shenton
Wendy R. Kates
Nikos Makris
spellingShingle Daniel S. Tylee
Zora Kikinis
Thomas P. Quinn
Kevin M. Antshel
Wanda Fremont
Muhammad A. Tahir
Anni Zhu
Xue Gong
Stephen J. Glatt
Ioana L. Coman
Martha E. Shenton
Wendy R. Kates
Nikos Makris
Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
NeuroImage: Clinical
author_facet Daniel S. Tylee
Zora Kikinis
Thomas P. Quinn
Kevin M. Antshel
Wanda Fremont
Muhammad A. Tahir
Anni Zhu
Xue Gong
Stephen J. Glatt
Ioana L. Coman
Martha E. Shenton
Wendy R. Kates
Nikos Makris
author_sort Daniel S. Tylee
title Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
title_short Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
title_full Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
title_fullStr Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
title_full_unstemmed Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study
title_sort machine-learning classification of 22q11.2 deletion syndrome: a diffusion tensor imaging study
publisher Elsevier
series NeuroImage: Clinical
issn 2213-1582
publishDate 2017-01-01
description Chromosome 22q11.2 deletion syndrome (22q11.2DS) is a genetic neurodevelopmental syndrome that has been studied intensively in order to understand relationships between the genetic microdeletion, brain development, cognitive function, and the emergence of psychiatric symptoms. White matter microstructural abnormalities identified using diffusion tensor imaging methods have been reported to affect a variety of neuroanatomical tracts in 22q11.2DS. In the present study, we sought to combine two discovery-based approaches: (1) white matter query language was used to parcellate the brain's white matter into tracts connecting pairs of 34, bilateral cortical regions and (2) the diffusion imaging characteristics of the resulting tracts were analyzed using a machine-learning method called support vector machine in order to optimize the selection of a set of imaging features that maximally discriminated 22q11.2DS and comparison subjects. With this unique approach, we both confirmed previously-recognized 22q11.2DS-related abnormalities in the inferior longitudinal fasciculus (ILF), and identified, for the first time, 22q11.2DS-related anomalies in the middle longitudinal fascicle and the extreme capsule, which may have been overlooked in previous, hypothesis-guided studies. We further observed that, in participants with 22q11.2DS, ILF metrics were significantly associated with positive prodromal symptoms of psychosis. Keywords: 22q11.2 deletion syndrome, Velocardiofacial syndrome, Diffusion tensor imaging, White matter query language, Machine-learning, Support vector machine, Inferior longitudinal fasciculus, Middle longitudinal fascicle, Extreme capsule, Callosal asymmetry
url http://www.sciencedirect.com/science/article/pii/S2213158217300785
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