DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs
Migraineurs show an increased load of white matter hyperintensities (WMHs) and more rapid deep WMH progression. Previous methods for WMH segmentation have limited efficacy to detect small deep WMHs. We developed a new fully automated detection pipeline, DEWS (DEep White matter hyperintensity Segment...
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doaj-c723a5bb8ea44ba790d1d13a505737f82020-11-25T01:01:27ZengElsevierNeuroImage: Clinical2213-15822018-01-0118638647DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineursBo-yong Park0Mi Ji Lee1Seung-hak Lee2Jihoon Cha3Chin-Sang Chung4Sung Tae Kim5Hyunjin Park6Department of Electronic, Electrical and Computer Engineering, Sungkyunkwan University, Suwon, 16419, Republic of Korea; Center for Neuroscience Imaging Research, Institute for Basic Science (IBS), Suwon, 16419, Republic of KoreaDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, 06351, Republic of KoreaDepartment of Electronic, Electrical and Computer Engineering, Sungkyunkwan University, Suwon, 16419, Republic of Korea; Center for Neuroscience Imaging Research, Institute for Basic Science (IBS), Suwon, 16419, Republic of KoreaDepartment of Radiology, Severance Hospital, Research Institute of Radiological Science, Yonsei University College of Medicine, Seoul, 03722, Republic of KoreaDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, 06351, Republic of KoreaDepartment of Radiology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, 06351, Republic of KoreaCenter for Neuroscience Imaging Research, Institute for Basic Science (IBS), Suwon, 16419, Republic of Korea; School of Electronic and Electrical Engineering, Sungkyunkwan University, Suwon, 16419, Republic of Korea; Corresponding author at: Center for Neuroscience Imaging Research/School of Electronic and Electrical Engineering, Sungkyunkwan University, Suwon, 16419, Republic of Korea.Migraineurs show an increased load of white matter hyperintensities (WMHs) and more rapid deep WMH progression. Previous methods for WMH segmentation have limited efficacy to detect small deep WMHs. We developed a new fully automated detection pipeline, DEWS (DEep White matter hyperintensity Segmentation framework), for small and superficially-located deep WMHs. A total of 148 non-elderly subjects with migraine were included in this study. The pipeline consists of three components: 1) white matter (WM) extraction, 2) WMH detection, and 3) false positive reduction. In WM extraction, we adjusted the WM mask to re-assign misclassified WMHs back to WM using many sequential low-level image processing steps. In WMH detection, the potential WMH clusters were detected using an intensity based threshold and region growing approach. For false positive reduction, the detected WMH clusters were classified into final WMHs and non-WMHs using the random forest (RF) classifier. Size, texture, and multi-scale deep features were used to train the RF classifier. DEWS successfully detected small deep WMHs with a high positive predictive value (PPV) of 0.98 and true positive rate (TPR) of 0.70 in the training and test sets. Similar performance of PPV (0.96) and TPR (0.68) was attained in the validation set. DEWS showed a superior performance in comparison with other methods. Our proposed pipeline is freely available online to help the research community in quantifying deep WMHs in non-elderly adults. Keywords: Deep white matter hyperintensity, Automated detection, Migrainehttp://www.sciencedirect.com/science/article/pii/S2213158218300676 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Bo-yong Park Mi Ji Lee Seung-hak Lee Jihoon Cha Chin-Sang Chung Sung Tae Kim Hyunjin Park |
spellingShingle |
Bo-yong Park Mi Ji Lee Seung-hak Lee Jihoon Cha Chin-Sang Chung Sung Tae Kim Hyunjin Park DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs NeuroImage: Clinical |
author_facet |
Bo-yong Park Mi Ji Lee Seung-hak Lee Jihoon Cha Chin-Sang Chung Sung Tae Kim Hyunjin Park |
author_sort |
Bo-yong Park |
title |
DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
title_short |
DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
title_full |
DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
title_fullStr |
DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
title_full_unstemmed |
DEWS (DEep White matter hyperintensity Segmentation framework): A fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
title_sort |
dews (deep white matter hyperintensity segmentation framework): a fully automated pipeline for detecting small deep white matter hyperintensities in migraineurs |
publisher |
Elsevier |
series |
NeuroImage: Clinical |
issn |
2213-1582 |
publishDate |
2018-01-01 |
description |
Migraineurs show an increased load of white matter hyperintensities (WMHs) and more rapid deep WMH progression. Previous methods for WMH segmentation have limited efficacy to detect small deep WMHs. We developed a new fully automated detection pipeline, DEWS (DEep White matter hyperintensity Segmentation framework), for small and superficially-located deep WMHs. A total of 148 non-elderly subjects with migraine were included in this study. The pipeline consists of three components: 1) white matter (WM) extraction, 2) WMH detection, and 3) false positive reduction. In WM extraction, we adjusted the WM mask to re-assign misclassified WMHs back to WM using many sequential low-level image processing steps. In WMH detection, the potential WMH clusters were detected using an intensity based threshold and region growing approach. For false positive reduction, the detected WMH clusters were classified into final WMHs and non-WMHs using the random forest (RF) classifier. Size, texture, and multi-scale deep features were used to train the RF classifier. DEWS successfully detected small deep WMHs with a high positive predictive value (PPV) of 0.98 and true positive rate (TPR) of 0.70 in the training and test sets. Similar performance of PPV (0.96) and TPR (0.68) was attained in the validation set. DEWS showed a superior performance in comparison with other methods. Our proposed pipeline is freely available online to help the research community in quantifying deep WMHs in non-elderly adults. Keywords: Deep white matter hyperintensity, Automated detection, Migraine |
url |
http://www.sciencedirect.com/science/article/pii/S2213158218300676 |
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