Multi-scale characterizations of colon polyps via computed tomographic colonography

Abstract Texture features have played an essential role in the field of medical imaging for computer-aided diagnosis. The gray-level co-occurrence matrix (GLCM)-based texture descriptor has emerged to become one of the most successful feature sets for these applications. This study aims to increase...

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Main Authors: Weiguo Cao, Marc J. Pomeroy, Yongfeng Gao, Matthew A. Barish, Almas F. Abbasi, Perry J. Pickhardt, Zhengrong Liang
Format: Article
Language:English
Published: SpringerOpen 2019-12-01
Series:Visual Computing for Industry, Biomedicine, and Art
Subjects:
Online Access:https://doi.org/10.1186/s42492-019-0032-7
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spelling doaj-c5fcc9c7ca4e467c8b3be4680bf9746b2020-12-27T12:04:56ZengSpringerOpenVisual Computing for Industry, Biomedicine, and Art2524-44422019-12-012111210.1186/s42492-019-0032-7Multi-scale characterizations of colon polyps via computed tomographic colonographyWeiguo Cao0Marc J. Pomeroy1Yongfeng Gao2Matthew A. Barish3Almas F. Abbasi4Perry J. Pickhardt5Zhengrong Liang6The Department of Radiology, Stony Brook UniversityThe Departments of Radiology and Biomedical Engineering, Stony Brook UniversityThe Department of Radiology, Stony Brook UniversityThe Department of Radiology, Stony Brook UniversityThe Department of Radiology, Stony Brook UniversityThe Department of Radiology, School of Medicine, University of WisconsinThe Departments of Radiology and Biomedical Engineering, Stony Brook UniversityAbstract Texture features have played an essential role in the field of medical imaging for computer-aided diagnosis. The gray-level co-occurrence matrix (GLCM)-based texture descriptor has emerged to become one of the most successful feature sets for these applications. This study aims to increase the potential of these features by introducing multi-scale analysis into the construction of GLCM texture descriptor. In this study, we first introduce a new parameter - stride, to explore the definition of GLCM. Then we propose three multi-scaling GLCM models according to its three parameters, (1) learning model by multiple displacements, (2) learning model by multiple strides (LMS), and (3) learning model by multiple angles. These models increase the texture information by introducing more texture patterns and mitigate direction sparsity and dense sampling problems presented in the traditional Haralick model. To further analyze the three parameters, we test the three models by performing classification on a dataset of 63 large polyp masses obtained from computed tomography colonoscopy consisting of 32 adenocarcinomas and 31 benign adenomas. Finally, the proposed methods are compared to several typical GLCM-texture descriptors and one deep learning model. LMS obtains the highest performance and enhances the prediction power to 0.9450 with standard deviation 0.0285 by area under the curve of receiver operating characteristics score which is a significant improvement.https://doi.org/10.1186/s42492-019-0032-7Colon cancerComputed tomographic colonographyPolyp characterizationTexture feature
collection DOAJ
language English
format Article
sources DOAJ
author Weiguo Cao
Marc J. Pomeroy
Yongfeng Gao
Matthew A. Barish
Almas F. Abbasi
Perry J. Pickhardt
Zhengrong Liang
spellingShingle Weiguo Cao
Marc J. Pomeroy
Yongfeng Gao
Matthew A. Barish
Almas F. Abbasi
Perry J. Pickhardt
Zhengrong Liang
Multi-scale characterizations of colon polyps via computed tomographic colonography
Visual Computing for Industry, Biomedicine, and Art
Colon cancer
Computed tomographic colonography
Polyp characterization
Texture feature
author_facet Weiguo Cao
Marc J. Pomeroy
Yongfeng Gao
Matthew A. Barish
Almas F. Abbasi
Perry J. Pickhardt
Zhengrong Liang
author_sort Weiguo Cao
title Multi-scale characterizations of colon polyps via computed tomographic colonography
title_short Multi-scale characterizations of colon polyps via computed tomographic colonography
title_full Multi-scale characterizations of colon polyps via computed tomographic colonography
title_fullStr Multi-scale characterizations of colon polyps via computed tomographic colonography
title_full_unstemmed Multi-scale characterizations of colon polyps via computed tomographic colonography
title_sort multi-scale characterizations of colon polyps via computed tomographic colonography
publisher SpringerOpen
series Visual Computing for Industry, Biomedicine, and Art
issn 2524-4442
publishDate 2019-12-01
description Abstract Texture features have played an essential role in the field of medical imaging for computer-aided diagnosis. The gray-level co-occurrence matrix (GLCM)-based texture descriptor has emerged to become one of the most successful feature sets for these applications. This study aims to increase the potential of these features by introducing multi-scale analysis into the construction of GLCM texture descriptor. In this study, we first introduce a new parameter - stride, to explore the definition of GLCM. Then we propose three multi-scaling GLCM models according to its three parameters, (1) learning model by multiple displacements, (2) learning model by multiple strides (LMS), and (3) learning model by multiple angles. These models increase the texture information by introducing more texture patterns and mitigate direction sparsity and dense sampling problems presented in the traditional Haralick model. To further analyze the three parameters, we test the three models by performing classification on a dataset of 63 large polyp masses obtained from computed tomography colonoscopy consisting of 32 adenocarcinomas and 31 benign adenomas. Finally, the proposed methods are compared to several typical GLCM-texture descriptors and one deep learning model. LMS obtains the highest performance and enhances the prediction power to 0.9450 with standard deviation 0.0285 by area under the curve of receiver operating characteristics score which is a significant improvement.
topic Colon cancer
Computed tomographic colonography
Polyp characterization
Texture feature
url https://doi.org/10.1186/s42492-019-0032-7
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