An extensive comparison of species-abundance distribution models

A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to...

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Main Authors: Elita Baldridge, David J. Harris, Xiao Xiao, Ethan P. White
Format: Article
Language:English
Published: PeerJ Inc. 2016-12-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/2823.pdf
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spelling doaj-c5f09745a7fe4c82975cc1c29a7c82de2020-11-24T23:06:46ZengPeerJ Inc.PeerJ2167-83592016-12-014e282310.7717/peerj.2823An extensive comparison of species-abundance distribution modelsElita Baldridge0David J. Harris1Xiao Xiao2Ethan P. White3Department of Biology, Utah State University, Logan, UT, United StatesDepartment of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, United StatesDepartment of Biology, Utah State University, Logan, UT, United StatesDepartment of Biology, Utah State University, Logan, UT, United StatesA number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD.https://peerj.com/articles/2823.pdfSpecies-abundance distributionInformaticsCommonnessRarityCitizen scienceAnimals
collection DOAJ
language English
format Article
sources DOAJ
author Elita Baldridge
David J. Harris
Xiao Xiao
Ethan P. White
spellingShingle Elita Baldridge
David J. Harris
Xiao Xiao
Ethan P. White
An extensive comparison of species-abundance distribution models
PeerJ
Species-abundance distribution
Informatics
Commonness
Rarity
Citizen science
Animals
author_facet Elita Baldridge
David J. Harris
Xiao Xiao
Ethan P. White
author_sort Elita Baldridge
title An extensive comparison of species-abundance distribution models
title_short An extensive comparison of species-abundance distribution models
title_full An extensive comparison of species-abundance distribution models
title_fullStr An extensive comparison of species-abundance distribution models
title_full_unstemmed An extensive comparison of species-abundance distribution models
title_sort extensive comparison of species-abundance distribution models
publisher PeerJ Inc.
series PeerJ
issn 2167-8359
publishDate 2016-12-01
description A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log-series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log-series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD.
topic Species-abundance distribution
Informatics
Commonness
Rarity
Citizen science
Animals
url https://peerj.com/articles/2823.pdf
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