The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research

Blue biotechnologies implement marine bio-resources for addressing practical concerns. The isolation of biologically active molecules from marine animals is one of the main ways this field develops. Strikingly, cnidaria are considered as sustainable resources for this purpose, as they possess unique...

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Main Authors: Aldo Nicosia, Alexander Mikov, Matteo Cammarata, Paolo Colombo, Yaroslav Andreev, Sergey Kozlov, Angela Cuttitta
Format: Article
Language:English
Published: MDPI AG 2018-10-01
Series:Marine Drugs
Subjects:
Online Access:https://www.mdpi.com/1660-3397/16/11/407
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spelling doaj-c5ca350434984c57a189f34044fad7522020-11-24T21:59:57ZengMDPI AGMarine Drugs1660-33972018-10-01161140710.3390/md16110407md16110407The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational ResearchAldo Nicosia0Alexander Mikov1Matteo Cammarata2Paolo Colombo3Yaroslav Andreev4Sergey Kozlov5Angela Cuttitta6National Research Council-Institute for the Study of Anthropogenic Impacts and Sustainability in the Marine Environment (IAS-CNR), Laboratory of Molecular Ecology and Biotechnology, Capo Granitola, Via del mare, Campobello di Mazara (TP), 91021 Sicily, ItalyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, GSP-7, ul. Miklukho-Maklaya, 16/10, 117997 Moscow, RussiaDepartment of Earth and Marine Sciences, University of Palermo, 90100 Palermo, ItalyIstituto di Biomedicina e di Immunologia Molecolare, Consiglio Nazionale delle Ricerche, Via Ugo La Malfa 153, 90146 Palermo, ItalyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, GSP-7, ul. Miklukho-Maklaya, 16/10, 117997 Moscow, RussiaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, GSP-7, ul. Miklukho-Maklaya, 16/10, 117997 Moscow, RussiaNational Research Council-Institute for the Study of Anthropogenic Impacts and Sustainability in the Marine Environment (IAS-CNR), Laboratory of Molecular Ecology and Biotechnology, Capo Granitola, Via del mare, Campobello di Mazara (TP), 91021 Sicily, ItalyBlue biotechnologies implement marine bio-resources for addressing practical concerns. The isolation of biologically active molecules from marine animals is one of the main ways this field develops. Strikingly, cnidaria are considered as sustainable resources for this purpose, as they possess unique cells for attack and protection, producing an articulated cocktail of bioactive substances. The Mediterranean sea anemone <i>Anemonia viridis</i> has been studied extensively for years. In this short review, we summarize advances in bioprospecting of the <i>A. viridis</i> toxin arsenal. <i>A. viridis</i> RNA datasets and toxin data mining approaches are briefly described. Analysis reveals the major pool of neurotoxins of <i>A. viridis</i>, which are particularly active on sodium and potassium channels. This review therefore integrates progress in both RNA-Seq based and biochemical-based bioprospecting of <i>A. viridis</i> toxins for biotechnological exploitation.https://www.mdpi.com/1660-3397/16/11/407transcriptomicsbio-prospectingcomputational biologyneurotoxins
collection DOAJ
language English
format Article
sources DOAJ
author Aldo Nicosia
Alexander Mikov
Matteo Cammarata
Paolo Colombo
Yaroslav Andreev
Sergey Kozlov
Angela Cuttitta
spellingShingle Aldo Nicosia
Alexander Mikov
Matteo Cammarata
Paolo Colombo
Yaroslav Andreev
Sergey Kozlov
Angela Cuttitta
The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
Marine Drugs
transcriptomics
bio-prospecting
computational biology
neurotoxins
author_facet Aldo Nicosia
Alexander Mikov
Matteo Cammarata
Paolo Colombo
Yaroslav Andreev
Sergey Kozlov
Angela Cuttitta
author_sort Aldo Nicosia
title The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
title_short The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
title_full The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
title_fullStr The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
title_full_unstemmed The <em>Anemonia viridis</em> Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
title_sort <em>anemonia viridis</em> venom: coupling biochemical purification and rna-seq for translational research
publisher MDPI AG
series Marine Drugs
issn 1660-3397
publishDate 2018-10-01
description Blue biotechnologies implement marine bio-resources for addressing practical concerns. The isolation of biologically active molecules from marine animals is one of the main ways this field develops. Strikingly, cnidaria are considered as sustainable resources for this purpose, as they possess unique cells for attack and protection, producing an articulated cocktail of bioactive substances. The Mediterranean sea anemone <i>Anemonia viridis</i> has been studied extensively for years. In this short review, we summarize advances in bioprospecting of the <i>A. viridis</i> toxin arsenal. <i>A. viridis</i> RNA datasets and toxin data mining approaches are briefly described. Analysis reveals the major pool of neurotoxins of <i>A. viridis</i>, which are particularly active on sodium and potassium channels. This review therefore integrates progress in both RNA-Seq based and biochemical-based bioprospecting of <i>A. viridis</i> toxins for biotechnological exploitation.
topic transcriptomics
bio-prospecting
computational biology
neurotoxins
url https://www.mdpi.com/1660-3397/16/11/407
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