Assessment of Metagenomic Sequencing and qPCR for Detection of Influenza D Virus in Bovine Respiratory Tract Samples

Assessment of Metagenomic Sequencing and qPCR for Detection of Influenza D Virus in Bovine Respiratory Tract Samples

High throughput sequencing is currently revolutionizing the genomics field and providing new approaches to the detection and characterization of microorganisms. The objective of this study was to assess the detection of influenza D virus (IDV) in bovine respiratory tract samples using two sequencing...

Full description

Bibliographic Details
Main Authors:	Maodong Zhang, Yanyun Huang, Dale L. Godson, Champika Fernando, Trevor W. Alexander, Janet E. Hill
Format:	Article
Language:	English
Published:	MDPI AG 2020-07-01
Series:	Viruses
Subjects:	Illumina MiSeq sequencing influenza D virus nanopore GridION sequencing qPCR diagnostics bovine respiratory disease
Online Access:	https://www.mdpi.com/1999-4915/12/8/814

Similar Items

Bacterial diversity and community in Qula from the Qinghai–Tibetan Plateau in China
by: Yan Zhu, et al.
Published: (2018-12-01)

Insights into bacterioplankton community structure from Sundarbans mangrove ecoregion using Sanger and Illumina MiSeq sequencing approaches: A comparative analysis
by: Anwesha Ghosh, et al.
Published: (2017-03-01)

16S rRNA Gene-Based Metagenomic Analysis of Ozark Cave Bacteria
by: Cássia Oliveira, et al.
Published: (2017-08-01)

A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding
by: Ko-Hsuan Chen, et al.
Published: (2021-06-01)

Consistent ultra-long DNA sequencing with automated slow pipetting
by: Trent M. Prall, et al.
Published: (2021-03-01)

Dynamics of soil properties and fungal community structure in continuous-cropped alfalfa fields in Northeast China
by: Qin Yao, et al.
Published: (2019-06-01)

A Grain-Based SARA Challenge Affects the Composition of Epimural and Mucosa-Associated Bacterial Communities throughout the Digestive Tract of Dairy Cows
by: Jan C. Plaizier, et al.
Published: (2021-06-01)

The response of dominant and rare taxa for fungal diversity within different root environments to the cultivation of Bt and conventional cotton varieties
by: Peng Li, et al.
Published: (2018-10-01)

Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing
by: Wells W. Wu, et al.
Published: (2018-05-01)

Effect of long-term fertilization strategies on bacterial community composition in a 35-year field experiment of Chinese Mollisols
by: Mingchao Ma, et al.
Published: (2018-02-01)

Chronic fertilization of 37 years alters the phylogenetic structure of soil arbuscular mycorrhizal fungi in Chinese Mollisols
by: Mingchao Ma, et al.
Published: (2018-04-01)

Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species
by: Mariah K. Taylor, et al.
Published: (2020-10-01)

Intercropping with Potato-Onion Enhanced the Soil Microbial Diversity of Tomato
by: Naihui Li, et al.
Published: (2020-06-01)

Effects of Fertilization Methods on Chemical Properties, Enzyme Activity,and Fungal Community Structure of Black Soil in Northeast China
by: Mingjiao Huang, et al.
Published: (2020-12-01)

The Diversity and Geographic Distribution of Cultivable Bacillus-Like Bacteria Across Black Soils of Northeast China
by: Junjie Liu, et al.
Published: (2019-06-01)

Isolation and characterization of phosphofungi, and screening of their plant growth-promoting activities
by: Xiaohui Wang, et al.
Published: (2018-04-01)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
by: Catherine M. Burke, et al.
Published: (2016-09-01)

A comprehensive analysis of the response of the fungal community structure to long-term continuous cropping in three typical upland crops
by: Hang LIU, et al.
Published: (2020-03-01)

Rapid and economical drug resistance profiling with Nanopore MinION for clinical specimens with low bacillary burden of Mycobacterium tuberculosis
by: Wai Sing Chan, et al.
Published: (2020-09-01)

Closing Clostridium botulinum Group I Genomes Using a Combination of Short- and Long-Reads
by: Narjol Gonzalez-Escalona, et al.
Published: (2020-02-01)

High-throughput sequencing reveals the core gut microbiota of the mud crab (Scylla paramamosain) in different coastal regions of southern China
by: Hongling Wei, et al.
Published: (2019-11-01)

Analysis of Difference in Microbial Community and Physicochemical Indices Between Surface and Central Parts of Chinese Special-Flavor Baijiu Daqu
by: Yanru Chen, et al.
Published: (2021-01-01)

Termite Societies Promote the Taxonomic and Functional Diversity of Archaeal Communities in Mound Soils
by: Monde Wakung’oli, et al.
Published: (2020-06-01)

Differential responses of the acidobacterial community in the topsoil and subsoil to fire disturbance in Pinus tabulaeformis stands
by: Weike Li, et al.
Published: (2019-12-01)

The draft genome of Corchorus olitorius cv. JRO-524 (Navin)
by: Debabrata Sarkar, et al.
Published: (2017-06-01)

Soil Depth Determines the Composition and Diversity of Bacterial and Archaeal Communities in a Poplar Plantation
by: Huili Feng, et al.
Published: (2019-06-01)

Changes in Soil Properties and Bacterial Community Composition with Biochar Amendment after Six Years
by: Shuxiu Fan, et al.
Published: (2020-05-01)

Fresh Compost Tea Application Does Not Change Rhizosphere Soil Bacterial Community Structure, and Has No Effects on Soybean Growth or Yield
by: Rana Bali, et al.
Published: (2021-08-01)

Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides)
by: Chun K. Tan, et al.
Published: (2019-05-01)

A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)
by: Aïda Azaiez, et al.
Published: (2018-12-01)

Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
by: Guoling Ren, et al.
Published: (2020-12-01)

The Effect of Xylooligosaccharide, Xylan, and Whole Wheat Bran on the Human Gut Bacteria
by: Miao Chen, et al.
Published: (2020-12-01)

Only Minor Changes in the Soil Microbiome of a Sub-alpine Forest After 20 Years of Moderately Increased Nitrogen Loads
by: Beat Frey, et al.
Published: (2020-06-01)

Long-term effects of mixed planting on arbuscular mycorrhizal fungal communities in the roots and soils of Juglans mandshurica plantations
by: Li Ji, et al.
Published: (2020-10-01)

Gut microbiota of red swamp crayfish Procambarus clarkii in integrated crayfish-rice cultivation model
by: Yan Shui, et al.
Published: (2020-01-01)

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem
by: Hui Yao, et al.
Published: (2019-04-01)

Biogeographic Distribution Patterns of the Archaeal Communities Across the Black Soil Zone of Northeast China
by: Junjie Liu, et al.
Published: (2019-01-01)

Biochemical Components Associated With Microbial Community Shift During the Pile-Fermentation of Primary Dark Tea
by: Qin Li, et al.
Published: (2018-07-01)

Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing
by: Xiaohong Li, et al.
Published: (2017-09-01)

Caracterização microbiana da remoção e degradação de 4-Nonilfenol em Reator Anaeróbio de Leito Fluidificado em escala aumentada
by: Dornelles, Henrique de Souza
Published: (2019)