Genotype and phenotype data analysis and visualization

In this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the...

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Main Authors: Alma Molytė, Vaidutis Kučinskas, Aušra Matulevičienė, Eglė Preikšaitienė
Format: Article
Language:English
Published: Klaipėda University 2013-09-01
Series:Computational Science and Techniques
Online Access:http://journals.ku.lt/index.php/CST/article/view/78
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spelling doaj-c2fcd37aeee54d91a0e947882f7291ca2021-07-02T16:19:55ZengKlaipėda UniversityComputational Science and Techniques2029-99662013-09-011214115410.15181/csat.v1i2.7879Genotype and phenotype data analysis and visualizationAlma MolytėVaidutis KučinskasAušra MatulevičienėEglė PreikšaitienėIn this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the dependences of congenital anomalies, deformations, these systems’ micro anomalies and congenital anomalies associated with orofacial clefs, the Spearman and Kendall correlation coefficients were applied. It has been detected which methods are better for genetic data visualization.http://journals.ku.lt/index.php/CST/article/view/78
collection DOAJ
language English
format Article
sources DOAJ
author Alma Molytė
Vaidutis Kučinskas
Aušra Matulevičienė
Eglė Preikšaitienė
spellingShingle Alma Molytė
Vaidutis Kučinskas
Aušra Matulevičienė
Eglė Preikšaitienė
Genotype and phenotype data analysis and visualization
Computational Science and Techniques
author_facet Alma Molytė
Vaidutis Kučinskas
Aušra Matulevičienė
Eglė Preikšaitienė
author_sort Alma Molytė
title Genotype and phenotype data analysis and visualization
title_short Genotype and phenotype data analysis and visualization
title_full Genotype and phenotype data analysis and visualization
title_fullStr Genotype and phenotype data analysis and visualization
title_full_unstemmed Genotype and phenotype data analysis and visualization
title_sort genotype and phenotype data analysis and visualization
publisher Klaipėda University
series Computational Science and Techniques
issn 2029-9966
publishDate 2013-09-01
description In this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the dependences of congenital anomalies, deformations, these systems’ micro anomalies and congenital anomalies associated with orofacial clefs, the Spearman and Kendall correlation coefficients were applied. It has been detected which methods are better for genetic data visualization.
url http://journals.ku.lt/index.php/CST/article/view/78
work_keys_str_mv AT almamolyte genotypeandphenotypedataanalysisandvisualization
AT vaidutiskucinskas genotypeandphenotypedataanalysisandvisualization
AT ausramatuleviciene genotypeandphenotypedataanalysisandvisualization
AT eglepreiksaitiene genotypeandphenotypedataanalysisandvisualization
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