Genotype and phenotype data analysis and visualization
In this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the...
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Klaipėda University
2013-09-01
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Series: | Computational Science and Techniques |
Online Access: | http://journals.ku.lt/index.php/CST/article/view/78 |
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doaj-c2fcd37aeee54d91a0e947882f7291ca2021-07-02T16:19:55ZengKlaipėda UniversityComputational Science and Techniques2029-99662013-09-011214115410.15181/csat.v1i2.7879Genotype and phenotype data analysis and visualizationAlma MolytėVaidutis KučinskasAušra MatulevičienėEglė PreikšaitienėIn this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the dependences of congenital anomalies, deformations, these systems’ micro anomalies and congenital anomalies associated with orofacial clefs, the Spearman and Kendall correlation coefficients were applied. It has been detected which methods are better for genetic data visualization.http://journals.ku.lt/index.php/CST/article/view/78 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Alma Molytė Vaidutis Kučinskas Aušra Matulevičienė Eglė Preikšaitienė |
spellingShingle |
Alma Molytė Vaidutis Kučinskas Aušra Matulevičienė Eglė Preikšaitienė Genotype and phenotype data analysis and visualization Computational Science and Techniques |
author_facet |
Alma Molytė Vaidutis Kučinskas Aušra Matulevičienė Eglė Preikšaitienė |
author_sort |
Alma Molytė |
title |
Genotype and phenotype data analysis and visualization |
title_short |
Genotype and phenotype data analysis and visualization |
title_full |
Genotype and phenotype data analysis and visualization |
title_fullStr |
Genotype and phenotype data analysis and visualization |
title_full_unstemmed |
Genotype and phenotype data analysis and visualization |
title_sort |
genotype and phenotype data analysis and visualization |
publisher |
Klaipėda University |
series |
Computational Science and Techniques |
issn |
2029-9966 |
publishDate |
2013-09-01 |
description |
In this paper, we present a comparative analysis of hierarchical clustering and multidimensional scaling methods for genotype and phenotype data analysis. Fisher's exact test was applied to determinate dependencies between congenital anomalies. In order to determine the relationship between the dependences of congenital anomalies, deformations, these systems’ micro anomalies and congenital anomalies associated with orofacial clefs, the Spearman and Kendall correlation coefficients were applied. It has been detected which methods are better for genetic data visualization. |
url |
http://journals.ku.lt/index.php/CST/article/view/78 |
work_keys_str_mv |
AT almamolyte genotypeandphenotypedataanalysisandvisualization AT vaidutiskucinskas genotypeandphenotypedataanalysisandvisualization AT ausramatuleviciene genotypeandphenotypedataanalysisandvisualization AT eglepreiksaitiene genotypeandphenotypedataanalysisandvisualization |
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1721326841195659264 |