DRAWID: user-friendly java software for chromosome measurements and idiogram drawing

An idiogram construction following chromosome measurements is a versatile tool for cytological, cytogenetic and phylogenetic studies. The information on chromosome length, centromere index and position of cytogenetic landmarks along with modern techniques (e.g. genomic and fluoresc...

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Main Authors: Ilya Kirov, Ludmila Khrustaleva, Katrijn Van Laere, Alexander Soloviev, Sofie Meeus, Dmitry Romanov, Igor Fesenko
Format: Article
Language:English
Published: Pensoft Publishers 2017-11-01
Series:Comparative Cytogenetics
Online Access:https://compcytogen.pensoft.net/articles.php?id=20830
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spelling doaj-bda6f166bd074be1bb1f5c71d3f51a272020-11-24T22:57:10ZengPensoft PublishersComparative Cytogenetics1993-07711993-078X2017-11-0111474775710.3897/compcytogen.v11i4.2083020830 DRAWID: user-friendly java software for chromosome measurements and idiogram drawingIlya Kirov0Ludmila Khrustaleva1Katrijn Van Laere2Alexander Soloviev3Sofie Meeus4Dmitry Romanov5Igor Fesenko6Russian Academy of SciencesRussian State Agrarian UniversityInstitute for Agricultural and Fisheries ResearchRussian State Agrarian UniversityInstitute for Agricultural and Fisheries ResearchRussian State Agrarian UniversityRussian Academy of Sciences An idiogram construction following chromosome measurements is a versatile tool for cytological, cytogenetic and phylogenetic studies. The information on chromosome length, centromere index and position of cytogenetic landmarks along with modern techniques (e.g. genomic and fluorescence in situ hybridization, banding, chromosome painting) can help to shed light on genome constitution, chromosome rearrangements and evolution. While idiogram construction is a routine task there are only few freely available programs that can perform chromosome measurements and no software for simultaneous measuring of chromosome parameters, chromosomal landmark and FISH signal positions and idiogram construction. To fill this gap, we developed DRAWID (DRAWing IDiogram), java-based cross-platforming program for chromosome analysis and idiogram construction. DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis. The output of the program is Microsoft XL table and publish-ready idiogram picture. DRAWID and the manual for its use are freely available on the website at: http://www.drawid.xyz https://compcytogen.pensoft.net/articles.php?id=20830
collection DOAJ
language English
format Article
sources DOAJ
author Ilya Kirov
Ludmila Khrustaleva
Katrijn Van Laere
Alexander Soloviev
Sofie Meeus
Dmitry Romanov
Igor Fesenko
spellingShingle Ilya Kirov
Ludmila Khrustaleva
Katrijn Van Laere
Alexander Soloviev
Sofie Meeus
Dmitry Romanov
Igor Fesenko
DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
Comparative Cytogenetics
author_facet Ilya Kirov
Ludmila Khrustaleva
Katrijn Van Laere
Alexander Soloviev
Sofie Meeus
Dmitry Romanov
Igor Fesenko
author_sort Ilya Kirov
title DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
title_short DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
title_full DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
title_fullStr DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
title_full_unstemmed DRAWID: user-friendly java software for chromosome measurements and idiogram drawing
title_sort drawid: user-friendly java software for chromosome measurements and idiogram drawing
publisher Pensoft Publishers
series Comparative Cytogenetics
issn 1993-0771
1993-078X
publishDate 2017-11-01
description An idiogram construction following chromosome measurements is a versatile tool for cytological, cytogenetic and phylogenetic studies. The information on chromosome length, centromere index and position of cytogenetic landmarks along with modern techniques (e.g. genomic and fluorescence in situ hybridization, banding, chromosome painting) can help to shed light on genome constitution, chromosome rearrangements and evolution. While idiogram construction is a routine task there are only few freely available programs that can perform chromosome measurements and no software for simultaneous measuring of chromosome parameters, chromosomal landmark and FISH signal positions and idiogram construction. To fill this gap, we developed DRAWID (DRAWing IDiogram), java-based cross-platforming program for chromosome analysis and idiogram construction. DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis. The output of the program is Microsoft XL table and publish-ready idiogram picture. DRAWID and the manual for its use are freely available on the website at: http://www.drawid.xyz
url https://compcytogen.pensoft.net/articles.php?id=20830
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