Further Validation of Quantum Crystallography Approaches
Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the the...
Main Authors: | , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
MDPI AG
2021-06-01
|
Series: | Molecules |
Subjects: | |
Online Access: | https://www.mdpi.com/1420-3049/26/12/3730 |
id |
doaj-bd293a86d68f4c70813d6de1224023dc |
---|---|
record_format |
Article |
spelling |
doaj-bd293a86d68f4c70813d6de1224023dc2021-07-01T00:33:29ZengMDPI AGMolecules1420-30492021-06-01263730373010.3390/molecules26123730Further Validation of Quantum Crystallography ApproachesMonika Wanat0Maura Malinska1Anna A. Hoser2Krzysztof Woźniak3Biological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandQuantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data.https://www.mdpi.com/1420-3049/26/12/3730multipole modelnormal mode refinementHirshfeld atom refinementtransferable aspherical atom modelcharge density |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Monika Wanat Maura Malinska Anna A. Hoser Krzysztof Woźniak |
spellingShingle |
Monika Wanat Maura Malinska Anna A. Hoser Krzysztof Woźniak Further Validation of Quantum Crystallography Approaches Molecules multipole model normal mode refinement Hirshfeld atom refinement transferable aspherical atom model charge density |
author_facet |
Monika Wanat Maura Malinska Anna A. Hoser Krzysztof Woźniak |
author_sort |
Monika Wanat |
title |
Further Validation of Quantum Crystallography Approaches |
title_short |
Further Validation of Quantum Crystallography Approaches |
title_full |
Further Validation of Quantum Crystallography Approaches |
title_fullStr |
Further Validation of Quantum Crystallography Approaches |
title_full_unstemmed |
Further Validation of Quantum Crystallography Approaches |
title_sort |
further validation of quantum crystallography approaches |
publisher |
MDPI AG |
series |
Molecules |
issn |
1420-3049 |
publishDate |
2021-06-01 |
description |
Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data. |
topic |
multipole model normal mode refinement Hirshfeld atom refinement transferable aspherical atom model charge density |
url |
https://www.mdpi.com/1420-3049/26/12/3730 |
work_keys_str_mv |
AT monikawanat furthervalidationofquantumcrystallographyapproaches AT mauramalinska furthervalidationofquantumcrystallographyapproaches AT annaahoser furthervalidationofquantumcrystallographyapproaches AT krzysztofwozniak furthervalidationofquantumcrystallographyapproaches |
_version_ |
1721348315990196224 |