Further Validation of Quantum Crystallography Approaches

Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the the...

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Main Authors: Monika Wanat, Maura Malinska, Anna A. Hoser, Krzysztof Woźniak
Format: Article
Language:English
Published: MDPI AG 2021-06-01
Series:Molecules
Subjects:
Online Access:https://www.mdpi.com/1420-3049/26/12/3730
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spelling doaj-bd293a86d68f4c70813d6de1224023dc2021-07-01T00:33:29ZengMDPI AGMolecules1420-30492021-06-01263730373010.3390/molecules26123730Further Validation of Quantum Crystallography ApproachesMonika Wanat0Maura Malinska1Anna A. Hoser2Krzysztof Woźniak3Biological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandBiological and Chemical Research Centre, Department of Chemistry, University of Warsaw, 101 Żwirki i Wigury, 02-089 Warszawa, PolandQuantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data.https://www.mdpi.com/1420-3049/26/12/3730multipole modelnormal mode refinementHirshfeld atom refinementtransferable aspherical atom modelcharge density
collection DOAJ
language English
format Article
sources DOAJ
author Monika Wanat
Maura Malinska
Anna A. Hoser
Krzysztof Woźniak
spellingShingle Monika Wanat
Maura Malinska
Anna A. Hoser
Krzysztof Woźniak
Further Validation of Quantum Crystallography Approaches
Molecules
multipole model
normal mode refinement
Hirshfeld atom refinement
transferable aspherical atom model
charge density
author_facet Monika Wanat
Maura Malinska
Anna A. Hoser
Krzysztof Woźniak
author_sort Monika Wanat
title Further Validation of Quantum Crystallography Approaches
title_short Further Validation of Quantum Crystallography Approaches
title_full Further Validation of Quantum Crystallography Approaches
title_fullStr Further Validation of Quantum Crystallography Approaches
title_full_unstemmed Further Validation of Quantum Crystallography Approaches
title_sort further validation of quantum crystallography approaches
publisher MDPI AG
series Molecules
issn 1420-3049
publishDate 2021-06-01
description Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data.
topic multipole model
normal mode refinement
Hirshfeld atom refinement
transferable aspherical atom model
charge density
url https://www.mdpi.com/1420-3049/26/12/3730
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