Substrate specificities in Salmonella typhi outer membrane protease (PgtE) from omptin family – An in silico proteomic approach

• Main Authors: Gopinath Samykannu, Princy Vijayababu, Jeyakumar Natarajan
• Format: Article
• Language: English
• Published: Elsevier 2019-01-01
• Series: Informatics in Medicine Unlocked
• Online Access: http://www.sciencedirect.com/science/article/pii/S2352914819302412

Salmonella typhi is a Gram-negative pathogen that causes severe systemic infections like typhoid fever and gastrointestinal disease in humans. PgtE belongs to the Omptin family, and plays a central role at the host-pathogen interface. In the present study, the S. typhi PgtE sequence was retrieved and the cleavage sites were predicted. Owing to the non-existence of a crystalline structure of S. typhi PgtE, theoretical 3D modeled structures were predicted using the I-TASSER server, which helps to understand the protease inhibitory mechanism. Molecular interaction studies with known protease inhibitors revealed that aspartic protease inhibitor Indinavir has the best interaction with S. typhi PgtE. From the metal ion docking studies, Mg2+ has better interaction compared to the Zn2+ and Cu2+ ions. The multiple pathogen sequence alignment of the Omptin proteases family shows that interacting residues were conserved among the Omptins. These results will provide new knowledge for the development of novel therapeutic strategies against S. typhi PgtE and Omptin family proteases. Keywords: Aspartic protease, Omptin, Outer membrane proteases and catalytic activity