The ensemble diversity of non-coding RNA structure is lower than random sequence

The ensemble diversity of non-coding RNA structure is lower than random sequence

In addition to energetically optimal structures, RNAs can fold into near energy suboptimal conformations that may be populated and play functional roles. The diversity of this structural ensemble can be estimated using a metric derived from the calculated RNA partition function: the ensemble diversi...

Full description

Bibliographic Details
Main Author:	Walter N. Moss
Format:	Article
Language:	English
Published:	KeAi Communications Co., Ltd. 2018-09-01
Series:	Non-coding RNA Research
Online Access:	http://www.sciencedirect.com/science/article/pii/S2468054018300271

Similar Items

Describing the Structural Diversity within an RNA’s Ensemble
by: Joshua S. Martin
Published: (2014-03-01)

Long Non-coding RNA in Plants in the Era of Reference Sequences
by: Hikmet Budak, et al.
Published: (2020-03-01)

Diversity of antisense and other non-coding RNAs in Archaea revealed by comparative small RNA sequencing in four Pyrobaculum species
by: David L Bernick, et al.
Published: (2012-07-01)

Influenza A virus coding regions exhibit host-specific global ordered RNA structure.
by: Salvatore F Priore, et al.
Published: (2012-01-01)

Analysis of equine protein-coding gene structure and expression by RNA-sequencing
by: Liu Jinze, et al.
Published: (2010-07-01)

Network Properties of the Ensemble of RNA Structures.
by: Peter Clote, et al.
Published: (2015-01-01)

Big (sequencing) future of non-coding RNA research for the understanding of cocaine
by: Da-Yu eWu
Published: (2012-09-01)

Integration of expressed sequence tag data flanking predicted RNA secondary structures facilitates novel non-coding RNA discovery.
by: Paul M Krzyzanowski, et al.
Published: (2011-01-01)

Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing.
by: Lilach Soreq, et al.
Published: (2014-03-01)

Ensemble Coding in Audition
by: Elise Piazza, et al.
Published: (2011-10-01)

Function by Structure: Spotlights on Xist Long Non-coding RNA
by: Greta Pintacuda, et al.
Published: (2017-12-01)

Sturm sequences and the eigenvalue distribution of the beta-Hermite random matrix ensemble
by: Chan, Cy P
Published: (2008)

Non-Coding RNA Sequencing of Equine Endometrium During Maternal Recognition of Pregnancy
by: Kristin M. Klohonatz, et al.
Published: (2019-10-01)

Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes
by: Butler Margaret I, et al.
Published: (2006-10-01)

Community structure of non-coding RNA interaction network
by: Nacher Jose C.
Published: (2013-06-01)

Drosophila 3' UTRs are more complex than protein-coding sequences.
by: Manjula Algama, et al.
Published: (2014-01-01)

Transcription-associated mutagenesis increases protein sequence diversity more effectively than does random mutagenesis in Escherichia coli.
by: Hyunchul Kim, et al.
Published: (2010-01-01)

Correction: Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson’s Leukocytes Identified by RNA Sequencing.
Published: (2014-05-01)

RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking
by: Margaret M. Parker, et al.
Published: (2017-10-01)

Statistics of eigenvectors in non-invariant random matrix ensembles
by: Truong, Kevin
Published: (2018)

Assessing NMR-based studies of denatured proteins using non-random structural ensembles
by: Zhang, Yue
Published: (2014)

Integrative analysis of large intergenic non-coding RNA and circular RNA using high-throughput RNA sequencing data
Published: (2015)

The anisotropic field of ensemble coding
by: David Pascucci, et al.
Published: (2021-04-01)

A Non-coding RNA Sequence Alignment Algorithm Based on Improved Covariance Model
by: Xiaodan Liu, et al.
Published: (2019-09-01)

Non coding RNA: sequence-specific guide for chromatin modification and DNA damage signaling
by: Sofia eFrancia, et al.
Published: (2015-11-01)

Systematic analysis of small non-coding RNA using next- generation sequencing technology
by: Wang, Wei-Chi, et al.
Published: (2011)

Characterizing alternative splicing and long non-coding RNA with high-throughput sequencing technology
by: Zhou, Ao
Published: (2018)

Predicting Long non-coding RNAs through feature ensemble learning
by: Yanzhen Xu, et al.
Published: (2020-12-01)

Disease-associated mutations that alter the RNA structural ensemble.
by: Matthew Halvorsen, et al.
Published: (2010-08-01)

Heterologous influenza vRNA segments with identical non-coding sequences stimulate viral RNA replication in <it>trans</it>
by: Malik Peiris J S, et al.
Published: (2008-01-01)

Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.
by: Kevin C Miranda, et al.
Published: (2014-01-01)

Correction to: RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking
by: Margaret M. Parker, et al.
Published: (2019-11-01)

Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing in chicken testis with extreme sperm motility
by: Yifan Liu, et al.
Published: (2017-08-01)

Insights Into mRNA and Long Non-coding RNA Profiling RNA Sequencing in Uterus of Chickens With Pink and Blue Eggshell Colors
by: Siyu Chen, et al.
Published: (2021-10-01)

Ensemble Classification through Random Projections for Single-Cell RNA-Seq Data
by: Aristidis G. Vrahatis, et al.
Published: (2020-10-01)

Long Non-coding RNA Structure and Function: Is There a Link?
by: Anna Zampetaki, et al.
Published: (2018-08-01)

Differential expression analysis comparing EBV uninfected to infected human cell lines identifies induced non-micro small non-coding RNAs
by: Lumbini I. Moss, et al.
Published: (2020-03-01)

Selection Pressures on RNA Sequences and Structures
by: Katja Nowick, et al.
Published: (2019-08-01)

Diversity in neural network ensembles
by: Brown, Gavin
Published: (2004)

ciRS-7 exonic sequence is embedded in a long non-coding RNA locus.
by: Steven P Barrett, et al.
Published: (2017-12-01)