Molecular Genetic Analysis of the Complete Genome of Tick-Borne Encephalitis Virus (Siberia Subtype): Modern Kolarovo-2008 Isolate

• Main Authors: E. V. Chausov, V. A. Ternovoy, E. V. Protopopova, S. N. Konovalova, Yu. V. Kononova, N. L. Tupota, N. S. Moskvitina, V. N. Romanenko, N. V. Ivanova, N. P. Bol'shakova, G. N. Leonova, V. B. Loktev
• Format: Article
• Language: Russian
• Published: Federal Government Health Institution, Russian Research Anti-Plague Institute “Microbe” 2011-08-01
• Series: Проблемы особо опасных инфекций
• Subjects: tick-borne encephalitis virus; kolarovo-2008 strain; nucleotide sequence; virus genome; flaviviruses
• Online Access: https://journal.microbe.ru/jour/article/view/702

Determined is the complete genome sequence of Kolarovo-2008 strain (Siberia subtype) of Tick-borne encephalitis virus (TBEV), isolated from a tick in the suburbs of the Tomsk city. Nucleotide sequence analysis testifies of the fact that the level of genetic differences within the Siberian subtype of TBEV amounts to 10 % of the nucleotide sequence and to 7 % of amino-acid sequence for certain virus genes. 3'-HTO of the genome of Siberian subtype has the highest rate of variability and the homology level ranging from 65 to 97 %. Kolarovo-2008 and Vasilchenko (isolated in Novosibirsk in 1969) strains have the highest level of genome homology. The level of dissimilarity between the two Tomsk strains is substantially higher: the total number of amino-acid substitutions in Tomsk Zausaev and Kolarovo-2008 strains equals to 124, and 3'HTO level of homology is 79 %. Identified genetic variability of the Siberian subtype of TBEV is of a great importance for further development and enhancement of tick-borne encephalitis virus diagnostics.