The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates

The rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the comple...

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Main Authors: Adrián Pintado, Isabel Pérez-Martínez, Isabel M. Aragón, José Antonio Gutiérrez-Barranquero, Antonio de Vicente, Francisco M. Cazorla, Cayo Ramos
Format: Article
Language:English
Published: MDPI AG 2021-06-01
Series:Microorganisms
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Online Access:https://www.mdpi.com/2076-2607/9/7/1388
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spelling doaj-b9be980c27854141a67e396a6ad015a42021-07-23T13:55:03ZengMDPI AGMicroorganisms2076-26072021-06-0191388138810.3390/microorganisms9071388The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> ExudatesAdrián Pintado0Isabel Pérez-Martínez1Isabel M. Aragón2José Antonio Gutiérrez-Barranquero3Antonio de Vicente4Francisco M. Cazorla5Cayo Ramos6Área de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainThe rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the complete genome sequence of <i>P. alcaligenes</i> AVO110. The phylogeny of all available <i>P. alcaligenes</i> genomes separates environmental isolates, including AVO110, from those obtained from infected human blood and oyster tissues, which cluster together with <i>Pseudomonas otitidis</i>. Core and pan-genome analyses showed that <i>P. alcaligenes</i> strains encode highly heterogenic gene pools, with the AVO110 genome encoding the largest and most exclusive variable region (~1.6 Mb, 1795 genes). The AVO110 singletons include a wide repertoire of genes related to biofilm formation, several of which are transcriptionally modulated by <i>R. necatrix</i> exudates. One of these genes (<i>cmpA</i>) encodes a GGDEF/EAL domain protein specific to <i>Pseudomonas</i> spp. strains isolated primarily from the rhizosphere of diverse plants, but also from soil and water samples. We also show that CmpA has a role in biofilm formation and that the integrity of its EAL domain is involved in this function. This study contributes to a better understanding of the niche-specific adaptations and lifestyles of <i>P. alcaligenes</i>, including the mycophagous behavior of strain AVO110.https://www.mdpi.com/2076-2607/9/7/1388<i>Pseudomonas alcaligenes</i>mycophagy<i>Rosellinia necatrix</i>fungal exudatesc-di-GMPbiofilm formation
collection DOAJ
language English
format Article
sources DOAJ
author Adrián Pintado
Isabel Pérez-Martínez
Isabel M. Aragón
José Antonio Gutiérrez-Barranquero
Antonio de Vicente
Francisco M. Cazorla
Cayo Ramos
spellingShingle Adrián Pintado
Isabel Pérez-Martínez
Isabel M. Aragón
José Antonio Gutiérrez-Barranquero
Antonio de Vicente
Francisco M. Cazorla
Cayo Ramos
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
Microorganisms
<i>Pseudomonas alcaligenes</i>
mycophagy
<i>Rosellinia necatrix</i>
fungal exudates
c-di-GMP
biofilm formation
author_facet Adrián Pintado
Isabel Pérez-Martínez
Isabel M. Aragón
José Antonio Gutiérrez-Barranquero
Antonio de Vicente
Francisco M. Cazorla
Cayo Ramos
author_sort Adrián Pintado
title The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
title_short The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
title_full The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
title_fullStr The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
title_full_unstemmed The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
title_sort rhizobacterium <i>pseudomonas alcaligenes</i> avo110 induces the expression of biofilm-related genes in response to <i>rosellinia necatrix</i> exudates
publisher MDPI AG
series Microorganisms
issn 2076-2607
publishDate 2021-06-01
description The rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the complete genome sequence of <i>P. alcaligenes</i> AVO110. The phylogeny of all available <i>P. alcaligenes</i> genomes separates environmental isolates, including AVO110, from those obtained from infected human blood and oyster tissues, which cluster together with <i>Pseudomonas otitidis</i>. Core and pan-genome analyses showed that <i>P. alcaligenes</i> strains encode highly heterogenic gene pools, with the AVO110 genome encoding the largest and most exclusive variable region (~1.6 Mb, 1795 genes). The AVO110 singletons include a wide repertoire of genes related to biofilm formation, several of which are transcriptionally modulated by <i>R. necatrix</i> exudates. One of these genes (<i>cmpA</i>) encodes a GGDEF/EAL domain protein specific to <i>Pseudomonas</i> spp. strains isolated primarily from the rhizosphere of diverse plants, but also from soil and water samples. We also show that CmpA has a role in biofilm formation and that the integrity of its EAL domain is involved in this function. This study contributes to a better understanding of the niche-specific adaptations and lifestyles of <i>P. alcaligenes</i>, including the mycophagous behavior of strain AVO110.
topic <i>Pseudomonas alcaligenes</i>
mycophagy
<i>Rosellinia necatrix</i>
fungal exudates
c-di-GMP
biofilm formation
url https://www.mdpi.com/2076-2607/9/7/1388
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