The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates
The rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the comple...
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doaj-b9be980c27854141a67e396a6ad015a42021-07-23T13:55:03ZengMDPI AGMicroorganisms2076-26072021-06-0191388138810.3390/microorganisms9071388The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> ExudatesAdrián Pintado0Isabel Pérez-Martínez1Isabel M. Aragón2José Antonio Gutiérrez-Barranquero3Antonio de Vicente4Francisco M. Cazorla5Cayo Ramos6Área de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainDepartamento de Microbiología y Protección de Cultivos, Instituto de Hortofruticultura Subtropical y Mediterránea «La Mayora», Extensión Campus de Teatinos, Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), E-29010 Málaga, SpainÁrea de Genética, Facultad de Ciencias, Campus Teatinos, Universidad de Málaga, E-29010 Málaga, SpainThe rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the complete genome sequence of <i>P. alcaligenes</i> AVO110. The phylogeny of all available <i>P. alcaligenes</i> genomes separates environmental isolates, including AVO110, from those obtained from infected human blood and oyster tissues, which cluster together with <i>Pseudomonas otitidis</i>. Core and pan-genome analyses showed that <i>P. alcaligenes</i> strains encode highly heterogenic gene pools, with the AVO110 genome encoding the largest and most exclusive variable region (~1.6 Mb, 1795 genes). The AVO110 singletons include a wide repertoire of genes related to biofilm formation, several of which are transcriptionally modulated by <i>R. necatrix</i> exudates. One of these genes (<i>cmpA</i>) encodes a GGDEF/EAL domain protein specific to <i>Pseudomonas</i> spp. strains isolated primarily from the rhizosphere of diverse plants, but also from soil and water samples. We also show that CmpA has a role in biofilm formation and that the integrity of its EAL domain is involved in this function. This study contributes to a better understanding of the niche-specific adaptations and lifestyles of <i>P. alcaligenes</i>, including the mycophagous behavior of strain AVO110.https://www.mdpi.com/2076-2607/9/7/1388<i>Pseudomonas alcaligenes</i>mycophagy<i>Rosellinia necatrix</i>fungal exudatesc-di-GMPbiofilm formation |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Adrián Pintado Isabel Pérez-Martínez Isabel M. Aragón José Antonio Gutiérrez-Barranquero Antonio de Vicente Francisco M. Cazorla Cayo Ramos |
spellingShingle |
Adrián Pintado Isabel Pérez-Martínez Isabel M. Aragón José Antonio Gutiérrez-Barranquero Antonio de Vicente Francisco M. Cazorla Cayo Ramos The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates Microorganisms <i>Pseudomonas alcaligenes</i> mycophagy <i>Rosellinia necatrix</i> fungal exudates c-di-GMP biofilm formation |
author_facet |
Adrián Pintado Isabel Pérez-Martínez Isabel M. Aragón José Antonio Gutiérrez-Barranquero Antonio de Vicente Francisco M. Cazorla Cayo Ramos |
author_sort |
Adrián Pintado |
title |
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates |
title_short |
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates |
title_full |
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates |
title_fullStr |
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates |
title_full_unstemmed |
The Rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 Induces the Expression of Biofilm-Related Genes in Response to <i>Rosellinia necatrix</i> Exudates |
title_sort |
rhizobacterium <i>pseudomonas alcaligenes</i> avo110 induces the expression of biofilm-related genes in response to <i>rosellinia necatrix</i> exudates |
publisher |
MDPI AG |
series |
Microorganisms |
issn |
2076-2607 |
publishDate |
2021-06-01 |
description |
The rhizobacterium <i>Pseudomonas alcaligenes</i> AVO110 exhibits antagonism toward the phytopathogenic fungus <i>Rosellinia necatrix</i>. This strain efficiently colonizes <i>R. necatrix</i> hyphae and is able to feed on their exudates. Here, we report the complete genome sequence of <i>P. alcaligenes</i> AVO110. The phylogeny of all available <i>P. alcaligenes</i> genomes separates environmental isolates, including AVO110, from those obtained from infected human blood and oyster tissues, which cluster together with <i>Pseudomonas otitidis</i>. Core and pan-genome analyses showed that <i>P. alcaligenes</i> strains encode highly heterogenic gene pools, with the AVO110 genome encoding the largest and most exclusive variable region (~1.6 Mb, 1795 genes). The AVO110 singletons include a wide repertoire of genes related to biofilm formation, several of which are transcriptionally modulated by <i>R. necatrix</i> exudates. One of these genes (<i>cmpA</i>) encodes a GGDEF/EAL domain protein specific to <i>Pseudomonas</i> spp. strains isolated primarily from the rhizosphere of diverse plants, but also from soil and water samples. We also show that CmpA has a role in biofilm formation and that the integrity of its EAL domain is involved in this function. This study contributes to a better understanding of the niche-specific adaptations and lifestyles of <i>P. alcaligenes</i>, including the mycophagous behavior of strain AVO110. |
topic |
<i>Pseudomonas alcaligenes</i> mycophagy <i>Rosellinia necatrix</i> fungal exudates c-di-GMP biofilm formation |
url |
https://www.mdpi.com/2076-2607/9/7/1388 |
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