Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
The aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequ...
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doaj-b890cdfdb2c44a3fa57192a35d5c3f082021-04-02T16:12:21ZengMDPI AGAgronomy2073-43952020-11-01101795179510.3390/agronomy10111795Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)Agnieszka Wolińska0Kinga Włodarczyk1Agnieszka Kuźniar2Anna Marzec-Grządziel3Jarosław Grządziel4Anna Gałązka5Łukasz Uzarowicz6Department of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Soil Science, Institute of Agriculture, Warsaw University of Life Sciences—SGGW, Nowoursynowska 159 Str., Building No. 37, 02-776 Warsaw, PolandThe aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequate indicators of soil properties being the consequence of land reclamation. The study site was located in the vicinity of the abandoned Fe sulphide and uranium mine in Rudki village (Holy Cross Mts., Poland). Three soil profiles with different chemical properties (pH, content of carbonates, soil salinity, content of total organic carbon and total nitrogen) were studied. Biodiversity was determined with the use of meta-barcoding of 16S rRNA community profiling analysis based on the hypervariable V3-V4 region of 16S rRNA gene (MiSeq, Illumina). The catabolic fingerprinting of soil microbial communities was evaluated with the use of Biolog<sup>®</sup>EcoPlates™ System. It was evidenced that changes in microbial structure and their metabolic activity were the consequence of a combined effect of both the soil depth and soil chemical properties being the final result of reclamation process. Consequently, microbial indicators (from phyla to genera level) indirectly testifying about success or ineffectiveness of reclamation in technogenic soils were recommended. To our best knowledge, the present study is the first insight into Polish Technosols biodiversity and catabolic activity.https://www.mdpi.com/2073-4395/10/11/1795technogenic soilsreclamation effectivenessbiodiversitycatabolic fingerprintingNGSCLPP |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Agnieszka Wolińska Kinga Włodarczyk Agnieszka Kuźniar Anna Marzec-Grządziel Jarosław Grządziel Anna Gałązka Łukasz Uzarowicz |
spellingShingle |
Agnieszka Wolińska Kinga Włodarczyk Agnieszka Kuźniar Anna Marzec-Grządziel Jarosław Grządziel Anna Gałązka Łukasz Uzarowicz Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) Agronomy technogenic soils reclamation effectiveness biodiversity catabolic fingerprinting NGS CLPP |
author_facet |
Agnieszka Wolińska Kinga Włodarczyk Agnieszka Kuźniar Anna Marzec-Grządziel Jarosław Grządziel Anna Gałązka Łukasz Uzarowicz |
author_sort |
Agnieszka Wolińska |
title |
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) |
title_short |
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) |
title_full |
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) |
title_fullStr |
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) |
title_full_unstemmed |
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland) |
title_sort |
soil microbial community profiling and bacterial metabolic activity of technosols as an effect of soil properties following land reclamation: a case study from the abandoned iron sulphide and uranium mine in rudki (south-central poland) |
publisher |
MDPI AG |
series |
Agronomy |
issn |
2073-4395 |
publishDate |
2020-11-01 |
description |
The aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequate indicators of soil properties being the consequence of land reclamation. The study site was located in the vicinity of the abandoned Fe sulphide and uranium mine in Rudki village (Holy Cross Mts., Poland). Three soil profiles with different chemical properties (pH, content of carbonates, soil salinity, content of total organic carbon and total nitrogen) were studied. Biodiversity was determined with the use of meta-barcoding of 16S rRNA community profiling analysis based on the hypervariable V3-V4 region of 16S rRNA gene (MiSeq, Illumina). The catabolic fingerprinting of soil microbial communities was evaluated with the use of Biolog<sup>®</sup>EcoPlates™ System. It was evidenced that changes in microbial structure and their metabolic activity were the consequence of a combined effect of both the soil depth and soil chemical properties being the final result of reclamation process. Consequently, microbial indicators (from phyla to genera level) indirectly testifying about success or ineffectiveness of reclamation in technogenic soils were recommended. To our best knowledge, the present study is the first insight into Polish Technosols biodiversity and catabolic activity. |
topic |
technogenic soils reclamation effectiveness biodiversity catabolic fingerprinting NGS CLPP |
url |
https://www.mdpi.com/2073-4395/10/11/1795 |
work_keys_str_mv |
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