Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)

The aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequ...

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Main Authors: Agnieszka Wolińska, Kinga Włodarczyk, Agnieszka Kuźniar, Anna Marzec-Grządziel, Jarosław Grządziel, Anna Gałązka, Łukasz Uzarowicz
Format: Article
Language:English
Published: MDPI AG 2020-11-01
Series:Agronomy
Subjects:
NGS
Online Access:https://www.mdpi.com/2073-4395/10/11/1795
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spelling doaj-b890cdfdb2c44a3fa57192a35d5c3f082021-04-02T16:12:21ZengMDPI AGAgronomy2073-43952020-11-01101795179510.3390/agronomy10111795Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)Agnieszka Wolińska0Kinga Włodarczyk1Agnieszka Kuźniar2Anna Marzec-Grządziel3Jarosław Grządziel4Anna Gałązka5Łukasz Uzarowicz6Department of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Biology and Biotechnology of Microorganisms, The John Paul II Catholic University of Lublin, Konstantynów St. 1 I, 20-708 Lublin, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Agricultural Microbiology, Institute of Soil Science and Plant Cultivation, Czartoryskich St. 8, 24-100 Puławy, PolandDepartment of Soil Science, Institute of Agriculture, Warsaw University of Life Sciences—SGGW, Nowoursynowska 159 Str., Building No. 37, 02-776 Warsaw, PolandThe aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequate indicators of soil properties being the consequence of land reclamation. The study site was located in the vicinity of the abandoned Fe sulphide and uranium mine in Rudki village (Holy Cross Mts., Poland). Three soil profiles with different chemical properties (pH, content of carbonates, soil salinity, content of total organic carbon and total nitrogen) were studied. Biodiversity was determined with the use of meta-barcoding of 16S rRNA community profiling analysis based on the hypervariable V3-V4 region of 16S rRNA gene (MiSeq, Illumina). The catabolic fingerprinting of soil microbial communities was evaluated with the use of Biolog<sup>®</sup>EcoPlates™ System. It was evidenced that changes in microbial structure and their metabolic activity were the consequence of a combined effect of both the soil depth and soil chemical properties being the final result of reclamation process. Consequently, microbial indicators (from phyla to genera level) indirectly testifying about success or ineffectiveness of reclamation in technogenic soils were recommended. To our best knowledge, the present study is the first insight into Polish Technosols biodiversity and catabolic activity.https://www.mdpi.com/2073-4395/10/11/1795technogenic soilsreclamation effectivenessbiodiversitycatabolic fingerprintingNGSCLPP
collection DOAJ
language English
format Article
sources DOAJ
author Agnieszka Wolińska
Kinga Włodarczyk
Agnieszka Kuźniar
Anna Marzec-Grządziel
Jarosław Grządziel
Anna Gałązka
Łukasz Uzarowicz
spellingShingle Agnieszka Wolińska
Kinga Włodarczyk
Agnieszka Kuźniar
Anna Marzec-Grządziel
Jarosław Grządziel
Anna Gałązka
Łukasz Uzarowicz
Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
Agronomy
technogenic soils
reclamation effectiveness
biodiversity
catabolic fingerprinting
NGS
CLPP
author_facet Agnieszka Wolińska
Kinga Włodarczyk
Agnieszka Kuźniar
Anna Marzec-Grządziel
Jarosław Grządziel
Anna Gałązka
Łukasz Uzarowicz
author_sort Agnieszka Wolińska
title Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
title_short Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
title_full Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
title_fullStr Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
title_full_unstemmed Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)
title_sort soil microbial community profiling and bacterial metabolic activity of technosols as an effect of soil properties following land reclamation: a case study from the abandoned iron sulphide and uranium mine in rudki (south-central poland)
publisher MDPI AG
series Agronomy
issn 2073-4395
publishDate 2020-11-01
description The aims of the study were (1) to recognize the structure of bacteria diversity in Technosols developed from mine spoils containing iron (Fe) sulphides with the use of culture-independent technique, and (2) to determine microbial metabolic activities, in the context of their potential to be an adequate indicators of soil properties being the consequence of land reclamation. The study site was located in the vicinity of the abandoned Fe sulphide and uranium mine in Rudki village (Holy Cross Mts., Poland). Three soil profiles with different chemical properties (pH, content of carbonates, soil salinity, content of total organic carbon and total nitrogen) were studied. Biodiversity was determined with the use of meta-barcoding of 16S rRNA community profiling analysis based on the hypervariable V3-V4 region of 16S rRNA gene (MiSeq, Illumina). The catabolic fingerprinting of soil microbial communities was evaluated with the use of Biolog<sup>®</sup>EcoPlates™ System. It was evidenced that changes in microbial structure and their metabolic activity were the consequence of a combined effect of both the soil depth and soil chemical properties being the final result of reclamation process. Consequently, microbial indicators (from phyla to genera level) indirectly testifying about success or ineffectiveness of reclamation in technogenic soils were recommended. To our best knowledge, the present study is the first insight into Polish Technosols biodiversity and catabolic activity.
topic technogenic soils
reclamation effectiveness
biodiversity
catabolic fingerprinting
NGS
CLPP
url https://www.mdpi.com/2073-4395/10/11/1795
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