Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization

Cancer is a major cause of death worldwide and becomes particularly threatening once it begins to metastasize. During metastasis, the blood vessels serve as pathways for cancerous cell transportation and hence are crucial for understanding cancer growth. Existing medical imaging modalities can provi...

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Main Authors: Junhong Shen, Abdul Hannan Faruqi, Yifan Jiang, Nima Maftoon
Format: Article
Language:English
Published: IEEE 2021-01-01
Series:IEEE Access
Subjects:
Online Access:https://ieeexplore.ieee.org/document/9328247/
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spelling doaj-b722896143cb4f8da102b00adafbf1b22021-03-30T14:49:58ZengIEEEIEEE Access2169-35362021-01-019206482066110.1109/ACCESS.2021.30525019328247Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global OptimizationJunhong Shen0Abdul Hannan Faruqi1https://orcid.org/0000-0002-8983-5105Yifan Jiang2Nima Maftoon3https://orcid.org/0000-0003-0853-996XDepartment of Systems Design Engineering, Computational Metastasis Laboratory, University of Waterloo, Waterloo, CanadaDepartment of Systems Design Engineering, Computational Metastasis Laboratory, University of Waterloo, Waterloo, CanadaDepartment of Systems Design Engineering, Computational Metastasis Laboratory, University of Waterloo, Waterloo, CanadaDepartment of Systems Design Engineering, Computational Metastasis Laboratory, University of Waterloo, Waterloo, CanadaCancer is a major cause of death worldwide and becomes particularly threatening once it begins to metastasize. During metastasis, the blood vessels serve as pathways for cancerous cell transportation and hence are crucial for understanding cancer growth. Existing medical imaging modalities can provide 3-D contrast images of the vascular tissues but with limited quality and detailedness. A much-needed tool for cancer research is thus one that can reconstruct vascular networks from low-quality clinical images. To this end, we developed a computational framework that takes 3-D medical images as input and reconstructs complete, patient-specific vascular network models using a mathematical optimization procedure. Our framework extracts major vessels from the images and uses the organ geometry to select vessel termination points. Then, it generates the remainder network based on physiological optimality principles. Using the framework, we obtained a set of network models with over 3000 terminal segments from a brain MRA scan. We analyzed the Strahler order, vessel radius, and branch length distributions of the models, which match with actual human data. We also performed fluid dynamics simulation inside the reconstructed vessels and showed that the pressure and shear stress distributions agree with existing in vivo measurements. The qualitative and quantitative agreements in vessel morphometry and hemodynamics demonstrate the effectiveness of the framework. Our method bridges the gap between image-based vessel models, accuracy of which is limited by the resolution of clinical images, and hypothetical models.https://ieeexplore.ieee.org/document/9328247/Global constructive optimizationpatient-specific vasculaturevascular network reconstruction
collection DOAJ
language English
format Article
sources DOAJ
author Junhong Shen
Abdul Hannan Faruqi
Yifan Jiang
Nima Maftoon
spellingShingle Junhong Shen
Abdul Hannan Faruqi
Yifan Jiang
Nima Maftoon
Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
IEEE Access
Global constructive optimization
patient-specific vasculature
vascular network reconstruction
author_facet Junhong Shen
Abdul Hannan Faruqi
Yifan Jiang
Nima Maftoon
author_sort Junhong Shen
title Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
title_short Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
title_full Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
title_fullStr Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
title_full_unstemmed Mathematical Reconstruction of Patient-Specific Vascular Networks Based on Clinical Images and Global Optimization
title_sort mathematical reconstruction of patient-specific vascular networks based on clinical images and global optimization
publisher IEEE
series IEEE Access
issn 2169-3536
publishDate 2021-01-01
description Cancer is a major cause of death worldwide and becomes particularly threatening once it begins to metastasize. During metastasis, the blood vessels serve as pathways for cancerous cell transportation and hence are crucial for understanding cancer growth. Existing medical imaging modalities can provide 3-D contrast images of the vascular tissues but with limited quality and detailedness. A much-needed tool for cancer research is thus one that can reconstruct vascular networks from low-quality clinical images. To this end, we developed a computational framework that takes 3-D medical images as input and reconstructs complete, patient-specific vascular network models using a mathematical optimization procedure. Our framework extracts major vessels from the images and uses the organ geometry to select vessel termination points. Then, it generates the remainder network based on physiological optimality principles. Using the framework, we obtained a set of network models with over 3000 terminal segments from a brain MRA scan. We analyzed the Strahler order, vessel radius, and branch length distributions of the models, which match with actual human data. We also performed fluid dynamics simulation inside the reconstructed vessels and showed that the pressure and shear stress distributions agree with existing in vivo measurements. The qualitative and quantitative agreements in vessel morphometry and hemodynamics demonstrate the effectiveness of the framework. Our method bridges the gap between image-based vessel models, accuracy of which is limited by the resolution of clinical images, and hypothetical models.
topic Global constructive optimization
patient-specific vasculature
vascular network reconstruction
url https://ieeexplore.ieee.org/document/9328247/
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AT abdulhannanfaruqi mathematicalreconstructionofpatientspecificvascularnetworksbasedonclinicalimagesandglobaloptimization
AT yifanjiang mathematicalreconstructionofpatientspecificvascularnetworksbasedonclinicalimagesandglobaloptimization
AT nimamaftoon mathematicalreconstructionofpatientspecificvascularnetworksbasedonclinicalimagesandglobaloptimization
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