Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral

Chemical signatures of carbonate biominerals are important for understanding biomineral formation, and are a subject of great interest in geosciences for applications in paleoclimatology and paleoceanography. A prominent unknown factor is the chemistry of organic matrices, in particular that of the...

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Main Authors: Alberto Pérez-Huerta, Fernando Laiginhas
Format: Article
Language:English
Published: MDPI AG 2018-05-01
Series:Minerals
Subjects:
Online Access:http://www.mdpi.com/2075-163X/8/6/223
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spelling doaj-b2361ae3a7094b11a832cc71e28f6f892020-11-24T21:22:13ZengMDPI AGMinerals2075-163X2018-05-018622310.3390/min8060223min8060223Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate BiomineralAlberto Pérez-Huerta0Fernando Laiginhas1Department of Geological Sciences, University of Alabama, Tuscaloosa, AL 35487, USADepartment of Geological Sciences, University of Alabama, Tuscaloosa, AL 35487, USAChemical signatures of carbonate biominerals are important for understanding biomineral formation, and are a subject of great interest in geosciences for applications in paleoclimatology and paleoceanography. A prominent unknown factor is the chemistry of organic matrices, in particular that of the inter-crystalline fraction. Here, we use atom probe tomography (APT) for the nanoscale chemical characterization of the mineral-organic interface in calcite from mussel shells. Our findings indicate that the quality of APT bulk chemistry results is highly dependent on sample preparation, yet data on biogenic calcite could be geochemically interpreted with confidence. Three-dimensional (3D) reconstructions of calcite tip specimens show the presence of organic matrix domains, characterized by the depletion of cations but enrichment in oxygen and carbon, and with at least 1% atomic increase in 16O relative to the surrounding mineral phase. This is the first relative, in-situ quantification of the chemical composition of the inter-crystalline organic matrix (IOM) for a carbonate biomineral, with implications for a better understanding of vital effects, proxy calibration, and the formation of these biocarbonates. Overall, our findings demonstrate the potential of nanoscale characterization of biominerals and their abiogenic counterparts to further advance our understanding of their chemistry.http://www.mdpi.com/2075-163X/8/6/223biogenic calciteatom probe tomography (APT)inter-crystalline organic matrixisotopes and trace elements
collection DOAJ
language English
format Article
sources DOAJ
author Alberto Pérez-Huerta
Fernando Laiginhas
spellingShingle Alberto Pérez-Huerta
Fernando Laiginhas
Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
Minerals
biogenic calcite
atom probe tomography (APT)
inter-crystalline organic matrix
isotopes and trace elements
author_facet Alberto Pérez-Huerta
Fernando Laiginhas
author_sort Alberto Pérez-Huerta
title Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
title_short Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
title_full Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
title_fullStr Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
title_full_unstemmed Preliminary Data on the Nanoscale Chemical Characterization of the Inter-Crystalline Organic Matrix of a Calcium Carbonate Biomineral
title_sort preliminary data on the nanoscale chemical characterization of the inter-crystalline organic matrix of a calcium carbonate biomineral
publisher MDPI AG
series Minerals
issn 2075-163X
publishDate 2018-05-01
description Chemical signatures of carbonate biominerals are important for understanding biomineral formation, and are a subject of great interest in geosciences for applications in paleoclimatology and paleoceanography. A prominent unknown factor is the chemistry of organic matrices, in particular that of the inter-crystalline fraction. Here, we use atom probe tomography (APT) for the nanoscale chemical characterization of the mineral-organic interface in calcite from mussel shells. Our findings indicate that the quality of APT bulk chemistry results is highly dependent on sample preparation, yet data on biogenic calcite could be geochemically interpreted with confidence. Three-dimensional (3D) reconstructions of calcite tip specimens show the presence of organic matrix domains, characterized by the depletion of cations but enrichment in oxygen and carbon, and with at least 1% atomic increase in 16O relative to the surrounding mineral phase. This is the first relative, in-situ quantification of the chemical composition of the inter-crystalline organic matrix (IOM) for a carbonate biomineral, with implications for a better understanding of vital effects, proxy calibration, and the formation of these biocarbonates. Overall, our findings demonstrate the potential of nanoscale characterization of biominerals and their abiogenic counterparts to further advance our understanding of their chemistry.
topic biogenic calcite
atom probe tomography (APT)
inter-crystalline organic matrix
isotopes and trace elements
url http://www.mdpi.com/2075-163X/8/6/223
work_keys_str_mv AT albertoperezhuerta preliminarydataonthenanoscalechemicalcharacterizationoftheintercrystallineorganicmatrixofacalciumcarbonatebiomineral
AT fernandolaiginhas preliminarydataonthenanoscalechemicalcharacterizationoftheintercrystallineorganicmatrixofacalciumcarbonatebiomineral
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