First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning

Analysis of histopathological image supposes the most reliable procedure to identify prostate cancer. Most studies try to develop computer aid-systems to face the Gleason grading problem. On the contrary, we delve into the discrimination between healthy and cancerous tissues in its earliest stage, o...

Full description

Bibliographic Details
Main Authors: Gabriel García, Adrián Colomer, Valery Naranjo
Format: Article
Language:English
Published: MDPI AG 2019-04-01
Series:Entropy
Subjects:
Online Access:https://www.mdpi.com/1099-4300/21/4/356
id doaj-b1452f69da6b40d585f6dca538d8af25
record_format Article
spelling doaj-b1452f69da6b40d585f6dca538d8af252020-11-24T20:54:53ZengMDPI AGEntropy1099-43002019-04-0121435610.3390/e21040356e21040356First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic LearningGabriel García0Adrián Colomer1Valery Naranjo2Instituto de Investigación e Innovación en Bioingeniería (I3B), Universitat Politècnica de València (UPV), Camino de Vera s/n, 46008 Valencia, SpainInstituto de Investigación e Innovación en Bioingeniería (I3B), Universitat Politècnica de València (UPV), Camino de Vera s/n, 46008 Valencia, SpainInstituto de Investigación e Innovación en Bioingeniería (I3B), Universitat Politècnica de València (UPV), Camino de Vera s/n, 46008 Valencia, SpainAnalysis of histopathological image supposes the most reliable procedure to identify prostate cancer. Most studies try to develop computer aid-systems to face the Gleason grading problem. On the contrary, we delve into the discrimination between healthy and cancerous tissues in its earliest stage, only focusing on the information contained in the automatically segmented gland candidates. We propose a hand-driven learning approach, in which we perform an exhaustive hand-crafted feature extraction stage combining in a novel way descriptors of morphology, texture, fractals and contextual information of the candidates under study. Then, we carry out an in-depth statistical analysis to select the most relevant features that constitute the inputs to the optimised machine-learning classifiers. Additionally, we apply for the first time on prostate segmented glands, deep-learning algorithms modifying the popular VGG19 neural network. We fine-tuned the last convolutional block of the architecture to provide the model specific knowledge about the gland images. The hand-driven learning approach, using a nonlinear Support Vector Machine, reports a slight outperforming over the rest of experiments with a final multi-class accuracy of <inline-formula> <math display="inline"> <semantics> <mrow> <mn>0.876</mn> <mo>&#177;</mo> <mn>0.026</mn> </mrow> </semantics> </math> </inline-formula> in the discrimination between false glands (artefacts), benign glands and Gleason grade 3 glands.https://www.mdpi.com/1099-4300/21/4/356gland classificationhand-crafted feature extractionfeature selectionhand-driven learningdeep learningprostate cancerhistological image
collection DOAJ
language English
format Article
sources DOAJ
author Gabriel García
Adrián Colomer
Valery Naranjo
spellingShingle Gabriel García
Adrián Colomer
Valery Naranjo
First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
Entropy
gland classification
hand-crafted feature extraction
feature selection
hand-driven learning
deep learning
prostate cancer
histological image
author_facet Gabriel García
Adrián Colomer
Valery Naranjo
author_sort Gabriel García
title First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
title_short First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
title_full First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
title_fullStr First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
title_full_unstemmed First-Stage Prostate Cancer Identification on Histopathological Images: Hand-Driven versus Automatic Learning
title_sort first-stage prostate cancer identification on histopathological images: hand-driven versus automatic learning
publisher MDPI AG
series Entropy
issn 1099-4300
publishDate 2019-04-01
description Analysis of histopathological image supposes the most reliable procedure to identify prostate cancer. Most studies try to develop computer aid-systems to face the Gleason grading problem. On the contrary, we delve into the discrimination between healthy and cancerous tissues in its earliest stage, only focusing on the information contained in the automatically segmented gland candidates. We propose a hand-driven learning approach, in which we perform an exhaustive hand-crafted feature extraction stage combining in a novel way descriptors of morphology, texture, fractals and contextual information of the candidates under study. Then, we carry out an in-depth statistical analysis to select the most relevant features that constitute the inputs to the optimised machine-learning classifiers. Additionally, we apply for the first time on prostate segmented glands, deep-learning algorithms modifying the popular VGG19 neural network. We fine-tuned the last convolutional block of the architecture to provide the model specific knowledge about the gland images. The hand-driven learning approach, using a nonlinear Support Vector Machine, reports a slight outperforming over the rest of experiments with a final multi-class accuracy of <inline-formula> <math display="inline"> <semantics> <mrow> <mn>0.876</mn> <mo>&#177;</mo> <mn>0.026</mn> </mrow> </semantics> </math> </inline-formula> in the discrimination between false glands (artefacts), benign glands and Gleason grade 3 glands.
topic gland classification
hand-crafted feature extraction
feature selection
hand-driven learning
deep learning
prostate cancer
histological image
url https://www.mdpi.com/1099-4300/21/4/356
work_keys_str_mv AT gabrielgarcia firststageprostatecanceridentificationonhistopathologicalimageshanddrivenversusautomaticlearning
AT adriancolomer firststageprostatecanceridentificationonhistopathologicalimageshanddrivenversusautomaticlearning
AT valerynaranjo firststageprostatecanceridentificationonhistopathologicalimageshanddrivenversusautomaticlearning
_version_ 1716793414964477952