Finding Top-k Covering Irreducible Contrast Sequence Rules for Disease Diagnosis
Diagnostic genes are usually used to distinguish different disease phenotypes. Most existing methods for diagnostic genes finding are based on either the individual or combinatorial discriminative power of gene(s). However, they both ignore the common expression trends among genes. In this paper, we...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Hindawi Limited
2015-01-01
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| Series: | Computational and Mathematical Methods in Medicine |
| Online Access: | http://dx.doi.org/10.1155/2015/353146 |
| Summary: | Diagnostic genes are usually used to distinguish different disease phenotypes. Most existing methods for diagnostic genes finding are based on either the individual or combinatorial discriminative power of gene(s). However, they both ignore the common expression trends among genes. In this paper, we devise a novel sequence rule, namely, top-k irreducible covering contrast sequence rules (TopkIRs for short), which helps to build a sample classifier of high accuracy. Furthermore, we propose an algorithm called MineTopkIRs to efficiently discover TopkIRs. Extensive experiments conducted on synthetic and real datasets show that MineTopkIRs is significantly faster than the previous methods and is of a higher classification accuracy. Additionally, many diagnostic genes discovered provide a new insight into disease diagnosis. |
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| ISSN: | 1748-670X 1748-6718 |