Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding.

Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding.

Biodiversity is an important parameter for the evaluation of the extant environmental conditions. Here, we used environmental DNA (eDNA) metabarcoding to investigate fish biodiversity in five different estuaries in Japan. Water samples for eDNA were collected from river mouths and adjacent coastal a...

Full description

Bibliographic Details
Main Authors:	Hyojin Ahn, Manabu Kume, Yuki Terashima, Feng Ye, Satoshi Kameyama, Masaki Miya, Yoh Yamashita, Akihide Kasai
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2020-01-01
Series:	PLoS ONE
Online Access:	https://doi.org/10.1371/journal.pone.0231127

Similar Items

Assessment of fish biodiversity in four Korean rivers using environmental DNA metabarcoding
by: Md Jobaidul Alam, et al.
Published: (2020-07-01)

Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation
by: Shin‐ichiro Oka, et al.
Published: (2021-01-01)

Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish
by: Masaru Kawato, et al.
Published: (2021-01-01)

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
by: Kana Hayami, et al.
Published: (2020-06-01)

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System.
by: Raphaël Civade, et al.
Published: (2016-01-01)

Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding
by: Albouy, C., et al.
Published: (2022)

Maximizing fish detection with eDNA metabarcoding
by: Cindy Bessey, et al.
Published: (2020-10-01)

Distribution of Japanese Eel Anguilla japonica Revealed by Environmental DNA
by: Akihide Kasai, et al.
Published: (2021-02-01)

eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants
by: Louise Nørgaard, et al.
Published: (2021-03-01)

Development of a new set of PCR primers for eDNA metabarcoding decapod crustaceans
by: Tomoyuki Komai, et al.
Published: (2019-04-01)

DNA metabarcoding adds valuable information for management of biodiversity in roadside stormwater ponds
by: Zhenhua Sun, et al.
Published: (2019-09-01)

eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity
by: Anaïs Lacoursière‐Roussel, et al.
Published: (2018-08-01)

Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient
by: Jonas Bylemans, et al.
Published: (2018-12-01)

Combining Multiple Markers in Environmental DNA Metabarcoding to Assess Deep-Sea Benthic Biodiversity
by: Jun Liu, et al.
Published: (2021-08-01)

Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding
by: Judith Bakker, et al.
Published: (2019-12-01)

Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems
by: Zachary S. Ladin, et al.
Published: (2021-01-01)

Author Correction: eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants
by: Louise Nørgaard, et al.
Published: (2021-08-01)

Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes.
by: Beverly McClenaghan, et al.
Published: (2020-01-01)

Global Diatom Biodiversity : An Assessment Using Metabarcoding Approach
by: Malviya, Shruti
Published: (2015)

Biodiversity of phytoplankton cyst assemblages in surface sediments of the Black Sea based on metabarcoding
by: Nina Dzhembekova, et al.
Published: (2018-11-01)

Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding
by: Natalie A. Sawaya, et al.
Published: (2019-02-01)

Evaluation of Soil Biodiversity in Alpine Habitats through eDNA Metabarcoding and Relationships with Environmental Features
by: Noemi Rota, et al.
Published: (2020-07-01)

New molecular methods to assess biodiversity. Potentials and pitfalls of DNA metabarcoding: a workshop report
by: Maria Kahlert, et al.
Published: (2019-08-01)

Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)
by: Kleopatra Leontidou, et al.
Published: (2021-09-01)

Towards Next-generation Biodiversity Monitoring: Improving Freshwater Quality Assessment using DNA Metabarcoding
by: Filipa Matos Silva Martins
Published: (2021)

Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness
by: Mary E. McElroy, et al.
Published: (2020-08-01)

Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid Fishes Using Museum Samples
by: Franz M. Heindler, et al.
Published: (2018-09-01)

Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks
by: Lu Shu, et al.
Published: (2021-06-01)

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
by: M. Miya, et al.
Published: (2015-01-01)

Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
by: Gert‐Jan Jeunen, et al.
Published: (2019-02-01)

Unearthing the Potential of Soil eDNA Metabarcoding—Towards Best Practice Advice for Invertebrate Biodiversity Assessment
by: Ameli Kirse, et al.
Published: (2021-05-01)

Marine Vertebrate Biodiversity and Distribution Within the Central California Current Using Environmental DNA (eDNA) Metabarcoding and Ecosystem Surveys
by: Collin J. Closek, et al.
Published: (2019-12-01)

Are Genetic Reference Libraries Sufficient for Environmental DNA Metabarcoding of Mekong River Basin Fish?
by: Christopher L. Jerde, et al.
Published: (2021-06-01)

eDNA in a bottleneck: Obstacles to fish metabarcoding studies in megadiverse freshwater systems
by: Jake M. Jackman, et al.
Published: (2021-07-01)

Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes
by: Andrea Polanco Fernández, et al.
Published: (2021-01-01)

Biodiversity and phylogeny of myxosporean parasites (Cnidaria, Myxozoa) infecting fish and annelids in Portuguese estuaries
by: Sónia Raquel Oliveira Rocha
Published: (2020)

DNA Metabarcoding of Amazonian Ichthyoplankton Swarms.
by: M E Maggia, et al.
Published: (2017-01-01)

DNA metabarcoding of forensic mycological samples
by: Saverio Giampaoli, et al.
Published: (2021-04-01)

Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds
by: Cristina Di Muri, et al.
Published: (2020-10-01)

Detecting fish assemblages with environmental DNA: Does protocol matter? Testing eDNA metabarcoding method robustness
by: Opale Coutant, et al.
Published: (2021-05-01)

Cannot write session to /tmp/vufind_sessions/sess_phvp1na3b88eq8s0lrhkqnqsao