Gene Regulatory Network of the Maurer's Cleft Pathway in
The Maurer's clefts (MCs) are very important for the survival of Plasmodium falciparum within an infected cell as they are induced by the parasite itself in the erythrocyte for protein trafficking. The MCs form an interesting part of the parasite's biology as they shed more light on how th...
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doaj-b03d700b635b495b99ddd7436ab907df2020-11-25T02:48:07ZengSAGE PublishingEvolutionary Bioinformatics1176-93432015-01-011110.4137/EBO.S25585 Gene Regulatory Network of the Maurer's Cleft Pathway in Itunuoluwa Isewon0Jelili Oyelade1Benedikt Brors2Ezekiel Adebiyi3Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Ogun State, Nigeria.Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Ogun State, Nigeria.Department of Applied Bioinformatics, German Cancer Research Centre (DKFZ), Heidelberg, Germany.Department of Applied Bioinformatics, German Cancer Research Centre (DKFZ), Heidelberg, Germany.The Maurer's clefts (MCs) are very important for the survival of Plasmodium falciparum within an infected cell as they are induced by the parasite itself in the erythrocyte for protein trafficking. The MCs form an interesting part of the parasite's biology as they shed more light on how the parasite remodels the erythrocyte leading to host pathogenesis and death. Here, we predicted and analyzed the genetic regulatory network of genes identified to belong to the MCs using regularized graphical Gaussian model. Our network shows four major activators, their corresponding target genes, and predicted binding sites. One of these master activators is the serine repeat antigen 5 (SERA5), predominantly expressed among the SERA multigene family of P. falciparum , which is one of the blood-stage malaria vaccine candidates. Our results provide more details about functional interactions and the regulation of the genes in the MCs’ pathway of P. falciparum.https://doi.org/10.4137/EBO.S25585 |
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DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Itunuoluwa Isewon Jelili Oyelade Benedikt Brors Ezekiel Adebiyi |
spellingShingle |
Itunuoluwa Isewon Jelili Oyelade Benedikt Brors Ezekiel Adebiyi Gene Regulatory Network of the Maurer's Cleft Pathway in Evolutionary Bioinformatics |
author_facet |
Itunuoluwa Isewon Jelili Oyelade Benedikt Brors Ezekiel Adebiyi |
author_sort |
Itunuoluwa Isewon |
title |
Gene Regulatory Network of the Maurer's Cleft Pathway in |
title_short |
Gene Regulatory Network of the Maurer's Cleft Pathway in |
title_full |
Gene Regulatory Network of the Maurer's Cleft Pathway in |
title_fullStr |
Gene Regulatory Network of the Maurer's Cleft Pathway in |
title_full_unstemmed |
Gene Regulatory Network of the Maurer's Cleft Pathway in |
title_sort |
gene regulatory network of the maurer's cleft pathway in |
publisher |
SAGE Publishing |
series |
Evolutionary Bioinformatics |
issn |
1176-9343 |
publishDate |
2015-01-01 |
description |
The Maurer's clefts (MCs) are very important for the survival of Plasmodium falciparum within an infected cell as they are induced by the parasite itself in the erythrocyte for protein trafficking. The MCs form an interesting part of the parasite's biology as they shed more light on how the parasite remodels the erythrocyte leading to host pathogenesis and death. Here, we predicted and analyzed the genetic regulatory network of genes identified to belong to the MCs using regularized graphical Gaussian model. Our network shows four major activators, their corresponding target genes, and predicted binding sites. One of these master activators is the serine repeat antigen 5 (SERA5), predominantly expressed among the SERA multigene family of P. falciparum , which is one of the blood-stage malaria vaccine candidates. Our results provide more details about functional interactions and the regulation of the genes in the MCs’ pathway of P. falciparum. |
url |
https://doi.org/10.4137/EBO.S25585 |
work_keys_str_mv |
AT itunuoluwaisewon generegulatorynetworkofthemaurerscleftpathwayin AT jelilioyelade generegulatorynetworkofthemaurerscleftpathwayin AT benediktbrors generegulatorynetworkofthemaurerscleftpathwayin AT ezekieladebiyi generegulatorynetworkofthemaurerscleftpathwayin |
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1724749781274722304 |