Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot

Albanian taxa and populations of the genus <i>Odontarrhena</i> are most promising candidates for research on metal tolerance and Ni-agromining, but their genetic structure remains unknown. We investigated phylogenetic relationships and genetic differentiation in relation to distribution...

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Main Authors: Andrea Coppi, Alan J. M. Baker, Isabella Bettarini, Ilaria Colzi, Guillaume Echevarria, Luigia Pazzagli, Cristina Gonnelli, Federico Selvi
Format: Article
Language:English
Published: MDPI AG 2020-12-01
Series:Plants
Subjects:
Online Access:https://www.mdpi.com/2223-7747/9/12/1686
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spelling doaj-afe8d6f9606d4453b9c3a1e90440dcb42020-12-02T00:01:30ZengMDPI AGPlants2223-77472020-12-0191686168610.3390/plants9121686Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine HotspotAndrea Coppi0Alan J. M. Baker1Isabella Bettarini2Ilaria Colzi3Guillaume Echevarria4Luigia Pazzagli5Cristina Gonnelli6Federico Selvi7Department of Biology, University of Firenze, 50121 Firenze, ItalyCentre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, QLD 4072, AustraliaDepartment of Biomedical Experimental and Clinical Sciences, University of Firenze, 50121 Firenze, ItalyDepartment of Biology, University of Firenze, 50121 Firenze, ItalyCentre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, QLD 4072, AustraliaDepartment of Biomedical Experimental and Clinical Sciences, University of Firenze, 50121 Firenze, ItalyDepartment of Biology, University of Firenze, 50121 Firenze, ItalyDepartment of Agriculture, Food, Environment and Forestry, Laboratories of Botany, 50121 Firenze, ItalyAlbanian taxa and populations of the genus <i>Odontarrhena</i> are most promising candidates for research on metal tolerance and Ni-agromining, but their genetic structure remains unknown. We investigated phylogenetic relationships and genetic differentiation in relation to distribution and ploidy of the taxa, anthropic site disturbance, elevation, soil type, and trace metals at each population site. After performing DNA sequencing of selected accessions, we applied DNA-fingerprinting to analyze the genetic structure of 32 populations from ultramafic and non-ultramafic outcrops across Albania. Low sequence divergence resulted in poorly resolved phylograms, but supported affinity between the two diploid serpentine endemics <i>O. moravensis</i> and <i>O. rigida</i>. Analysis of molecular variance (AMOVA) revealed significant population differentiation, but no isolation by distance. Among-population variation was higher in polyploids than in diploids, in which genetic distances were lower. Genetic admixing at population and individual level occurred especially in the polyploids <i>O. chalcidica</i>, <i>O. decipiens</i>, and <i>O. smolikana</i>. Admixing increased with site disturbance. Outlier loci were higher in serpentine populations but decreased along altitude with lower drought and heat stress. Genetic variability gained by gene flow and hybridization at contact zones with “resident” species of primary ultramafic habitats promoted expansion of the tetraploid <i>O. chalcidica</i> across anthropogenic sites.https://www.mdpi.com/2223-7747/9/12/1686anthropogenic disturbanceheavy metalsNi-hyperaccumulatorspolyploidspopulation geneticsoutlier loci
collection DOAJ
language English
format Article
sources DOAJ
author Andrea Coppi
Alan J. M. Baker
Isabella Bettarini
Ilaria Colzi
Guillaume Echevarria
Luigia Pazzagli
Cristina Gonnelli
Federico Selvi
spellingShingle Andrea Coppi
Alan J. M. Baker
Isabella Bettarini
Ilaria Colzi
Guillaume Echevarria
Luigia Pazzagli
Cristina Gonnelli
Federico Selvi
Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
Plants
anthropogenic disturbance
heavy metals
Ni-hyperaccumulators
polyploids
population genetics
outlier loci
author_facet Andrea Coppi
Alan J. M. Baker
Isabella Bettarini
Ilaria Colzi
Guillaume Echevarria
Luigia Pazzagli
Cristina Gonnelli
Federico Selvi
author_sort Andrea Coppi
title Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
title_short Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
title_full Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
title_fullStr Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
title_full_unstemmed Population Genetics of <i>Odontarrhena</i> (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot
title_sort population genetics of <i>odontarrhena</i> (brassicaceae) from albania: the effects of anthropic habitat disturbance, soil, and altitude on a ni-hyperaccumulator plant group from a major serpentine hotspot
publisher MDPI AG
series Plants
issn 2223-7747
publishDate 2020-12-01
description Albanian taxa and populations of the genus <i>Odontarrhena</i> are most promising candidates for research on metal tolerance and Ni-agromining, but their genetic structure remains unknown. We investigated phylogenetic relationships and genetic differentiation in relation to distribution and ploidy of the taxa, anthropic site disturbance, elevation, soil type, and trace metals at each population site. After performing DNA sequencing of selected accessions, we applied DNA-fingerprinting to analyze the genetic structure of 32 populations from ultramafic and non-ultramafic outcrops across Albania. Low sequence divergence resulted in poorly resolved phylograms, but supported affinity between the two diploid serpentine endemics <i>O. moravensis</i> and <i>O. rigida</i>. Analysis of molecular variance (AMOVA) revealed significant population differentiation, but no isolation by distance. Among-population variation was higher in polyploids than in diploids, in which genetic distances were lower. Genetic admixing at population and individual level occurred especially in the polyploids <i>O. chalcidica</i>, <i>O. decipiens</i>, and <i>O. smolikana</i>. Admixing increased with site disturbance. Outlier loci were higher in serpentine populations but decreased along altitude with lower drought and heat stress. Genetic variability gained by gene flow and hybridization at contact zones with “resident” species of primary ultramafic habitats promoted expansion of the tetraploid <i>O. chalcidica</i> across anthropogenic sites.
topic anthropogenic disturbance
heavy metals
Ni-hyperaccumulators
polyploids
population genetics
outlier loci
url https://www.mdpi.com/2223-7747/9/12/1686
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