Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents

Marine hydrothermal systems are characterized by a pronounced biogeochemical sulfur cycle with the participation of sulfur-oxidizing, sulfate-reducing and sulfur-disproportionating microorganisms. The diversity and metabolism of sulfur disproportionators are studied to a much lesser extent compared...

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Main Authors: Maxime Allioux, Stéven Yvenou, Galina Slobodkina, Alexander Slobodkin, Zongze Shao, Mohamed Jebbar, Karine Alain
Format: Article
Language:English
Published: MDPI AG 2020-07-01
Series:Microorganisms
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Online Access:https://www.mdpi.com/2076-2607/8/8/1132
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spelling doaj-afe5f77e28114c33bf7728c88a11816d2020-11-25T02:48:11ZengMDPI AGMicroorganisms2076-26072020-07-0181132113210.3390/microorganisms8081132Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal VentsMaxime Allioux0Stéven Yvenou1Galina Slobodkina2Alexander Slobodkin3Zongze Shao4Mohamed Jebbar5Karine Alain6Univ Brest, CNRS, IFREMER, LIA1211, Laboratoire de Microbiologie des Environnements Extrêmes LM2E, IUEM, Rue Dumont d’Urville, F-29280 Plouzané, FranceUniv Brest, CNRS, IFREMER, LIA1211, Laboratoire de Microbiologie des Environnements Extrêmes LM2E, IUEM, Rue Dumont d’Urville, F-29280 Plouzané, FranceWinogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, 117312 Moscow, RussiaWinogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, 117312 Moscow, RussiaKey Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, ChinaUniv Brest, CNRS, IFREMER, LIA1211, Laboratoire de Microbiologie des Environnements Extrêmes LM2E, IUEM, Rue Dumont d’Urville, F-29280 Plouzané, FranceUniv Brest, CNRS, IFREMER, LIA1211, Laboratoire de Microbiologie des Environnements Extrêmes LM2E, IUEM, Rue Dumont d’Urville, F-29280 Plouzané, FranceMarine hydrothermal systems are characterized by a pronounced biogeochemical sulfur cycle with the participation of sulfur-oxidizing, sulfate-reducing and sulfur-disproportionating microorganisms. The diversity and metabolism of sulfur disproportionators are studied to a much lesser extent compared with other microbial groups. <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> is an anaerobic thermophilic bacterium isolated from a shallow sea hydrothermal vent. <i>D. thermomarina</i> is an obligate chemolithoautotroph able to grow by the disproportionation of sulfite and elemental sulfur. Here, we present the results of the sequencing and analysis of the high-quality draft genome of strain SH388<sup>T</sup>. The genome consists of a one circular chromosome of 2,461,642 base pairs, has a G + C content of 71.1 mol% and 2267 protein-coding sequences. The genome analysis revealed a complete set of genes essential to CO<sub>2</sub> fixation via the reductive acetyl-CoA (Wood-Ljungdahl) pathway and gluconeogenesis. The genome of <i>D. thermomarina</i> encodes a complete set of genes necessary for the dissimilatory reduction of sulfates, which are probably involved in the disproportionation of sulfur. Data on the occurrences of <i>Dissulfurirhabdus</i> 16S rRNA gene sequences in gene libraries and metagenome datasets showed the worldwide distribution of the members of this genus. This study expands our knowledge of the microbial contribution into carbon and sulfur cycles in the marine hydrothermal environments.https://www.mdpi.com/2076-2607/8/8/1132genome annotation<i>Dissulfurirhabdus</i>shallow sea hydrothermal ventsinorganic sulfur compound disproportionation
collection DOAJ
language English
format Article
sources DOAJ
author Maxime Allioux
Stéven Yvenou
Galina Slobodkina
Alexander Slobodkin
Zongze Shao
Mohamed Jebbar
Karine Alain
spellingShingle Maxime Allioux
Stéven Yvenou
Galina Slobodkina
Alexander Slobodkin
Zongze Shao
Mohamed Jebbar
Karine Alain
Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
Microorganisms
genome annotation
<i>Dissulfurirhabdus</i>
shallow sea hydrothermal vents
inorganic sulfur compound disproportionation
author_facet Maxime Allioux
Stéven Yvenou
Galina Slobodkina
Alexander Slobodkin
Zongze Shao
Mohamed Jebbar
Karine Alain
author_sort Maxime Allioux
title Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
title_short Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
title_full Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
title_fullStr Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
title_full_unstemmed Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
title_sort genomic characterization and environmental distribution of a thermophilic anaerobe <i>dissulfurirhabdus thermomarina</i> sh388<sup>t</sup> involved in disproportionation of sulfur compounds in shallow sea hydrothermal vents
publisher MDPI AG
series Microorganisms
issn 2076-2607
publishDate 2020-07-01
description Marine hydrothermal systems are characterized by a pronounced biogeochemical sulfur cycle with the participation of sulfur-oxidizing, sulfate-reducing and sulfur-disproportionating microorganisms. The diversity and metabolism of sulfur disproportionators are studied to a much lesser extent compared with other microbial groups. <i>Dissulfurirhabdus thermomarina</i> SH388<sup>T</sup> is an anaerobic thermophilic bacterium isolated from a shallow sea hydrothermal vent. <i>D. thermomarina</i> is an obligate chemolithoautotroph able to grow by the disproportionation of sulfite and elemental sulfur. Here, we present the results of the sequencing and analysis of the high-quality draft genome of strain SH388<sup>T</sup>. The genome consists of a one circular chromosome of 2,461,642 base pairs, has a G + C content of 71.1 mol% and 2267 protein-coding sequences. The genome analysis revealed a complete set of genes essential to CO<sub>2</sub> fixation via the reductive acetyl-CoA (Wood-Ljungdahl) pathway and gluconeogenesis. The genome of <i>D. thermomarina</i> encodes a complete set of genes necessary for the dissimilatory reduction of sulfates, which are probably involved in the disproportionation of sulfur. Data on the occurrences of <i>Dissulfurirhabdus</i> 16S rRNA gene sequences in gene libraries and metagenome datasets showed the worldwide distribution of the members of this genus. This study expands our knowledge of the microbial contribution into carbon and sulfur cycles in the marine hydrothermal environments.
topic genome annotation
<i>Dissulfurirhabdus</i>
shallow sea hydrothermal vents
inorganic sulfur compound disproportionation
url https://www.mdpi.com/2076-2607/8/8/1132
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