EFFECT OF THE ION TREATMENT ON AN RNA HAIRPIN: MOLECULAR DYNAMICS STUDY

EFFECT OF THE ION TREATMENT ON AN RNA HAIRPIN: MOLECULAR DYNAMICS STUDY

Molecular dynamics has been employed to study the effect of ion treatment on the stability of 14-nucleotide RNA hairpin of Coxsackievirus B3. Three AMBER force fields were used: AMBER94, AMBER98, and AMBER99, which showed no significant structural difference of the hairpin. Thereafter, we applied tw...

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Bibliographic Details
Main Authors: Elisabeth Catherina Widjajakusuma, Alessandra Villa, Gerhard Stock
Format: Article
Language:English
Published: Universitas Gadjah Mada 2012-02-01
Series:Indonesian Journal of Chemistry
Subjects:
RNA hairpin
md simulations
ion treatment
Coxsackievirus B3
Online Access:https://jurnal.ugm.ac.id/ijc/article/view/21365

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