Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks
Whole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lie...
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Wolters Kluwer Medknow Publications
2019-01-01
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doaj-af86f60124b449cf9855ce0a089b44ec2020-11-24T21:40:10ZengWolters Kluwer Medknow PublicationsJournal of Pathology Informatics2153-35392153-35392019-01-011015510.4103/jpi.jpi_32_18Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networksSteven N HartWilliam FlotteAndrew P NorganKabeer K ShahZachary R BuchanTaofic MounajjedThomas J FlotteWhole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lies in the application of quantitative computational tools to automate search tasks, assist in classic diagnostic classification tasks, and improve prognosis and theranostics. An essential step in enabling these advancements is to apply advances in machine learning and artificial intelligence from other fields to previously inaccessible pathology datasets, thereby enabling the application of new technologies to solve persistent diagnostic challenges in pathology. Here, we applied convolutional neural networks to differentiate between two forms of melanocytic lesions (Spitz and conventional). Classification accuracy at the patch level was 99.0%–2% when applied to WSI. Importantly, when the model was trained without careful image curation by a pathologist, the training took significantly longer and had lower overall performance. These results highlight the utility of augmented human intelligence in digital pathology applications, and the critical role pathologists will play in the evolution of computational pathology algorithms.http://www.jpathinformatics.org/article.asp?issn=2153-3539;year=2019;volume=10;issue=1;spage=5;epage=5;aulast=HartBioinformaticsdeep learningdermatologyimage analysis |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Steven N Hart William Flotte Andrew P Norgan Kabeer K Shah Zachary R Buchan Taofic Mounajjed Thomas J Flotte |
spellingShingle |
Steven N Hart William Flotte Andrew P Norgan Kabeer K Shah Zachary R Buchan Taofic Mounajjed Thomas J Flotte Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks Journal of Pathology Informatics Bioinformatics deep learning dermatology image analysis |
author_facet |
Steven N Hart William Flotte Andrew P Norgan Kabeer K Shah Zachary R Buchan Taofic Mounajjed Thomas J Flotte |
author_sort |
Steven N Hart |
title |
Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
title_short |
Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
title_full |
Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
title_fullStr |
Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
title_full_unstemmed |
Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
title_sort |
classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
publisher |
Wolters Kluwer Medknow Publications |
series |
Journal of Pathology Informatics |
issn |
2153-3539 2153-3539 |
publishDate |
2019-01-01 |
description |
Whole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lies in the application of quantitative computational tools to automate search tasks, assist in classic diagnostic classification tasks, and improve prognosis and theranostics. An essential step in enabling these advancements is to apply advances in machine learning and artificial intelligence from other fields to previously inaccessible pathology datasets, thereby enabling the application of new technologies to solve persistent diagnostic challenges in pathology. Here, we applied convolutional neural networks to differentiate between two forms of melanocytic lesions (Spitz and conventional). Classification accuracy at the patch level was 99.0%–2% when applied to WSI. Importantly, when the model was trained without careful image curation by a pathologist, the training took significantly longer and had lower overall performance. These results highlight the utility of augmented human intelligence in digital pathology applications, and the critical role pathologists will play in the evolution of computational pathology algorithms. |
topic |
Bioinformatics deep learning dermatology image analysis |
url |
http://www.jpathinformatics.org/article.asp?issn=2153-3539;year=2019;volume=10;issue=1;spage=5;epage=5;aulast=Hart |
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