Trait selection using procrustes analysis for the study of genetic diversity in Conilon coffee

• Main Authors: Daiana Salles Pontes, Renato Domiciano Silva Rosado, Cosme Damião Cruz, Moysés Nascimento, Ana Maria Cruz Oliveira, Scott Michael Pensky
• Format: Article
• Language: English
• Published: Eduem (Editora da Universidade Estadual de Maringá) 2020-05-01
• Series: Acta Scientiarum: Agronomy
• Subjects: principal components; graphical comparison; selection criteria; discard of variables; plant breeding
• Online Access: http://www.periodicos.uem.br/ojs/index.php/ActaSciAgron/article/view/43195

Trait selection is occasionally necessary to save money and time, as well as accelerate breeding program processes. This study aimed to propose two criteria to select traits based on a Procrustes analysis that are poorly explored in genetic breeding: Criterion 1 (backward algorithm) and Criterion 2 (exhaustive algorithm). Then, these two criteria were further compared with Jolliffe’s criterion, which has often been used to select traits in genetic diversity studies. Sixteen agronomic traits were considered, and 40 Conilon coffee (Coffea canephora) accessions were evaluated. This study showed that the flexibility in selecting traits by researcher preference, graphical visualization, and Procrustes  statistic through criteria 1 and 2 is a fast and reliable alternative for decision-making. These decisions are based on the removal and addition of traits for phenotyping in studies of Conilon coffee diversity that can be applied to other crops. Other relevant aspects of selection traits criteria were also discussed.