A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid

Acute hepatopancreatic necrosis disease (AHPND) is a lethal shrimp disease. The pathogenic agent of this disease is a special <i>Vibrio parahaemolyticus </i>strain that contains a pVA1 plasmid. The protein products of two toxin genes in pVA1, <i>pirA<sup>vp</sup> and pi...

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Main Authors: Hao-Ching Wang, Shin-Jen Lin, Arpita Mohapatra, Ramya Kumar, Han-Ching Wang
Format: Article
Language:English
Published: MDPI AG 2020-07-01
Series:Microorganisms
Subjects:
Online Access:https://www.mdpi.com/2076-2607/8/7/996
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spelling doaj-adb42c39870b4d70b2af8bbc42d6dc2b2020-11-25T03:01:49ZengMDPI AGMicroorganisms2076-26072020-07-01899699610.3390/microorganisms8070996A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 PlasmidHao-Ching Wang0Shin-Jen Lin1Arpita Mohapatra2Ramya Kumar3Han-Ching Wang4The Ph.D. Program for Translational Medicine, College of Medical Science and Technology, Taipei Medical University and Academia Sinica, Taipei 110, TaiwanInternational Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan 701, TaiwanGraduate Institute of Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, TaiwanInternational Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan 701, TaiwanInternational Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan 701, TaiwanAcute hepatopancreatic necrosis disease (AHPND) is a lethal shrimp disease. The pathogenic agent of this disease is a special <i>Vibrio parahaemolyticus </i>strain that contains a pVA1 plasmid. The protein products of two toxin genes in pVA1, <i>pirA<sup>vp</sup> and pirB<sup>vp</sup></i>, targeted the shrimp’s hepatopancreatic cells and were identified as the major virulence factors. However, in addition to <i>pirA<sup>vp</sup> and pirB<sup>vp</sup></i>, pVA1 also contains about ~90 other open-reading frames (ORFs), which may encode functional proteins. NCBI BLASTp annotations of the functional roles of 40 pVA1 genes reveal transposases, conjugation factors, and antirestriction proteins that are involved in horizontal gene transfer, plasmid transmission, and maintenance, as well as components of type II and III secretion systems that may facilitate the toxic effects of pVA1-containing <i>Vibrio</i> spp. There is also evidence of a post-segregational killing (PSK) system that would ensure that only pVA1 plasmid-containing bacteria could survive after segregation. Here, in this review, we assess the functional importance of these pVA1 genes and consider those which might be worthy of further study.https://www.mdpi.com/2076-2607/8/7/996acute hepatopancreatic necrosis disease<i>Vibrio parahaemolyticus</i>pVA1 plasmidPirA<i><sup>vp</sup></i>PirB<i><sup>vp</sup></i>transposases
collection DOAJ
language English
format Article
sources DOAJ
author Hao-Ching Wang
Shin-Jen Lin
Arpita Mohapatra
Ramya Kumar
Han-Ching Wang
spellingShingle Hao-Ching Wang
Shin-Jen Lin
Arpita Mohapatra
Ramya Kumar
Han-Ching Wang
A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
Microorganisms
acute hepatopancreatic necrosis disease
<i>Vibrio parahaemolyticus</i>
pVA1 plasmid
PirA<i><sup>vp</sup></i>
PirB<i><sup>vp</sup></i>
transposases
author_facet Hao-Ching Wang
Shin-Jen Lin
Arpita Mohapatra
Ramya Kumar
Han-Ching Wang
author_sort Hao-Ching Wang
title A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
title_short A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
title_full A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
title_fullStr A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
title_full_unstemmed A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid
title_sort review of the functional annotations of important genes in the ahpnd-causing pva1 plasmid
publisher MDPI AG
series Microorganisms
issn 2076-2607
publishDate 2020-07-01
description Acute hepatopancreatic necrosis disease (AHPND) is a lethal shrimp disease. The pathogenic agent of this disease is a special <i>Vibrio parahaemolyticus </i>strain that contains a pVA1 plasmid. The protein products of two toxin genes in pVA1, <i>pirA<sup>vp</sup> and pirB<sup>vp</sup></i>, targeted the shrimp’s hepatopancreatic cells and were identified as the major virulence factors. However, in addition to <i>pirA<sup>vp</sup> and pirB<sup>vp</sup></i>, pVA1 also contains about ~90 other open-reading frames (ORFs), which may encode functional proteins. NCBI BLASTp annotations of the functional roles of 40 pVA1 genes reveal transposases, conjugation factors, and antirestriction proteins that are involved in horizontal gene transfer, plasmid transmission, and maintenance, as well as components of type II and III secretion systems that may facilitate the toxic effects of pVA1-containing <i>Vibrio</i> spp. There is also evidence of a post-segregational killing (PSK) system that would ensure that only pVA1 plasmid-containing bacteria could survive after segregation. Here, in this review, we assess the functional importance of these pVA1 genes and consider those which might be worthy of further study.
topic acute hepatopancreatic necrosis disease
<i>Vibrio parahaemolyticus</i>
pVA1 plasmid
PirA<i><sup>vp</sup></i>
PirB<i><sup>vp</sup></i>
transposases
url https://www.mdpi.com/2076-2607/8/7/996
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