Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition.
A central goal of cognitive neuroscience is to decode human brain activity-that is, to infer mental processes from observed patterns of whole-brain activation. Previous decoding efforts have focused on classifying brain activity into a small set of discrete cognitive states. To attain maximal utilit...
Main Authors: | , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2017-10-01
|
Series: | PLoS Computational Biology |
Online Access: | https://doi.org/10.1371/journal.pcbi.1005649 |
id |
doaj-ac4fc189672844c7a1a2d4fe4e4d55fd |
---|---|
record_format |
Article |
spelling |
doaj-ac4fc189672844c7a1a2d4fe4e4d55fd2021-06-17T04:33:31ZengPublic Library of Science (PLoS)PLoS Computational Biology1553-734X1553-73582017-10-011310e100564910.1371/journal.pcbi.1005649Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition.Timothy N RubinOluwasanmi KoyejoKrzysztof J GorgolewskiMichael N JonesRussell A PoldrackTal YarkoniA central goal of cognitive neuroscience is to decode human brain activity-that is, to infer mental processes from observed patterns of whole-brain activation. Previous decoding efforts have focused on classifying brain activity into a small set of discrete cognitive states. To attain maximal utility, a decoding framework must be open-ended, systematic, and context-sensitive-that is, capable of interpreting numerous brain states, presented in arbitrary combinations, in light of prior information. Here we take steps towards this objective by introducing a probabilistic decoding framework based on a novel topic model-Generalized Correspondence Latent Dirichlet Allocation-that learns latent topics from a database of over 11,000 published fMRI studies. The model produces highly interpretable, spatially-circumscribed topics that enable flexible decoding of whole-brain images. Importantly, the Bayesian nature of the model allows one to "seed" decoder priors with arbitrary images and text-enabling researchers, for the first time, to generate quantitative, context-sensitive interpretations of whole-brain patterns of brain activity.https://doi.org/10.1371/journal.pcbi.1005649 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Timothy N Rubin Oluwasanmi Koyejo Krzysztof J Gorgolewski Michael N Jones Russell A Poldrack Tal Yarkoni |
spellingShingle |
Timothy N Rubin Oluwasanmi Koyejo Krzysztof J Gorgolewski Michael N Jones Russell A Poldrack Tal Yarkoni Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. PLoS Computational Biology |
author_facet |
Timothy N Rubin Oluwasanmi Koyejo Krzysztof J Gorgolewski Michael N Jones Russell A Poldrack Tal Yarkoni |
author_sort |
Timothy N Rubin |
title |
Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
title_short |
Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
title_full |
Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
title_fullStr |
Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
title_full_unstemmed |
Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
title_sort |
decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. |
publisher |
Public Library of Science (PLoS) |
series |
PLoS Computational Biology |
issn |
1553-734X 1553-7358 |
publishDate |
2017-10-01 |
description |
A central goal of cognitive neuroscience is to decode human brain activity-that is, to infer mental processes from observed patterns of whole-brain activation. Previous decoding efforts have focused on classifying brain activity into a small set of discrete cognitive states. To attain maximal utility, a decoding framework must be open-ended, systematic, and context-sensitive-that is, capable of interpreting numerous brain states, presented in arbitrary combinations, in light of prior information. Here we take steps towards this objective by introducing a probabilistic decoding framework based on a novel topic model-Generalized Correspondence Latent Dirichlet Allocation-that learns latent topics from a database of over 11,000 published fMRI studies. The model produces highly interpretable, spatially-circumscribed topics that enable flexible decoding of whole-brain images. Importantly, the Bayesian nature of the model allows one to "seed" decoder priors with arbitrary images and text-enabling researchers, for the first time, to generate quantitative, context-sensitive interpretations of whole-brain patterns of brain activity. |
url |
https://doi.org/10.1371/journal.pcbi.1005649 |
work_keys_str_mv |
AT timothynrubin decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition AT oluwasanmikoyejo decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition AT krzysztofjgorgolewski decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition AT michaelnjones decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition AT russellapoldrack decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition AT talyarkoni decodingbrainactivityusingalargescaleprobabilisticfunctionalanatomicalatlasofhumancognition |
_version_ |
1721374661720145920 |