A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells

Head direction (HD) cells, which fire action potentials whenever an animal points its head in a particular direction, are thought to subserve the animal’s sense of spatial orientation. HD cells are found prominently in several thalamo-cortical regions including anterior thalamic nuclei, postsubiculu...

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Main Authors: Zishen Xu, Wei Wu, Shawn S. Winter, Max L. Mehlman, William N. Butler, Christine M. Simmons, Ryan E. Harvey, Laura E. Berkowitz, Yang Chen, Jeffrey S. Taube, Aaron A. Wilber, Benjamin J. Clark
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-12-01
Series:Frontiers in Neural Circuits
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fncir.2019.00075/full
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spelling doaj-aa26fef8db0f4c92b407a64bfe8b64142020-11-24T21:17:51ZengFrontiers Media S.A.Frontiers in Neural Circuits1662-51102019-12-011310.3389/fncir.2019.00075478362A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction CellsZishen Xu0Wei Wu1Shawn S. Winter2Max L. Mehlman3William N. Butler4Christine M. Simmons5Ryan E. Harvey6Laura E. Berkowitz7Yang Chen8Jeffrey S. Taube9Aaron A. Wilber10Benjamin J. Clark11Department of Statistics, Florida State University, Tallahassee, FL, United StatesDepartment of Statistics, Florida State University, Tallahassee, FL, United StatesDepartment of Psychological and Brain Sciences, Center for Cognitive Neuroscience, Dartmouth College, Hanover, NH, United StatesDepartment of Psychological and Brain Sciences, Center for Cognitive Neuroscience, Dartmouth College, Hanover, NH, United StatesDepartment of Psychological and Brain Sciences, Center for Cognitive Neuroscience, Dartmouth College, Hanover, NH, United StatesDepartment of Psychology, Program in Neuroscience, Florida State University, Tallahassee, FL, United StatesDepartment of Psychology, University of New Mexico, Albuquerque, NM, United StatesDepartment of Psychology, University of New Mexico, Albuquerque, NM, United StatesDepartment of Statistics, Florida State University, Tallahassee, FL, United StatesDepartment of Psychological and Brain Sciences, Center for Cognitive Neuroscience, Dartmouth College, Hanover, NH, United StatesDepartment of Psychology, Program in Neuroscience, Florida State University, Tallahassee, FL, United StatesDepartment of Psychology, University of New Mexico, Albuquerque, NM, United StatesHead direction (HD) cells, which fire action potentials whenever an animal points its head in a particular direction, are thought to subserve the animal’s sense of spatial orientation. HD cells are found prominently in several thalamo-cortical regions including anterior thalamic nuclei, postsubiculum, medial entorhinal cortex, parasubiculum, and the parietal cortex. While a number of methods in neural decoding have been developed to assess the dynamics of spatial signals within thalamo-cortical regions, studies conducting a quantitative comparison of machine learning and statistical model-based decoding methods on HD cell activity are currently lacking. Here, we compare statistical model-based and machine learning approaches by assessing decoding accuracy and evaluate variables that contribute to population coding across thalamo-cortical HD cells.https://www.frontiersin.org/article/10.3389/fncir.2019.00075/fullspatial behaviornavigationmemoryanterior thalamusparahippocampalparietal
collection DOAJ
language English
format Article
sources DOAJ
author Zishen Xu
Wei Wu
Shawn S. Winter
Max L. Mehlman
William N. Butler
Christine M. Simmons
Ryan E. Harvey
Laura E. Berkowitz
Yang Chen
Jeffrey S. Taube
Aaron A. Wilber
Benjamin J. Clark
spellingShingle Zishen Xu
Wei Wu
Shawn S. Winter
Max L. Mehlman
William N. Butler
Christine M. Simmons
Ryan E. Harvey
Laura E. Berkowitz
Yang Chen
Jeffrey S. Taube
Aaron A. Wilber
Benjamin J. Clark
A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
Frontiers in Neural Circuits
spatial behavior
navigation
memory
anterior thalamus
parahippocampal
parietal
author_facet Zishen Xu
Wei Wu
Shawn S. Winter
Max L. Mehlman
William N. Butler
Christine M. Simmons
Ryan E. Harvey
Laura E. Berkowitz
Yang Chen
Jeffrey S. Taube
Aaron A. Wilber
Benjamin J. Clark
author_sort Zishen Xu
title A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
title_short A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
title_full A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
title_fullStr A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
title_full_unstemmed A Comparison of Neural Decoding Methods and Population Coding Across Thalamo-Cortical Head Direction Cells
title_sort comparison of neural decoding methods and population coding across thalamo-cortical head direction cells
publisher Frontiers Media S.A.
series Frontiers in Neural Circuits
issn 1662-5110
publishDate 2019-12-01
description Head direction (HD) cells, which fire action potentials whenever an animal points its head in a particular direction, are thought to subserve the animal’s sense of spatial orientation. HD cells are found prominently in several thalamo-cortical regions including anterior thalamic nuclei, postsubiculum, medial entorhinal cortex, parasubiculum, and the parietal cortex. While a number of methods in neural decoding have been developed to assess the dynamics of spatial signals within thalamo-cortical regions, studies conducting a quantitative comparison of machine learning and statistical model-based decoding methods on HD cell activity are currently lacking. Here, we compare statistical model-based and machine learning approaches by assessing decoding accuracy and evaluate variables that contribute to population coding across thalamo-cortical HD cells.
topic spatial behavior
navigation
memory
anterior thalamus
parahippocampal
parietal
url https://www.frontiersin.org/article/10.3389/fncir.2019.00075/full
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