Clustered DNA Damage: Electronic Properties and Their Influence on Charge Transfer. 7,8-Dihydro-8-Oxo-2′-Deoxyguaosine Versus 5′,8-Cyclo-2′-Deoxyadenosines: A Theoretical Approach

Approximately 3 &#215; 10<sup>17</sup> DNA damage events take place per hour in the human body. Within clustered DNA lesions, they pose a serious problem for repair proteins, especially for iron&#8722;sulfur glycosylases (MutyH), which can recognize them by the electron-transfer...

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Bibliographic Details
Main Author: Boleslaw T. Karwowski
Format: Article
Language:English
Published: MDPI AG 2020-02-01
Series:Cells
Subjects:
dft
Online Access:https://www.mdpi.com/2073-4409/9/2/424
Description
Summary:Approximately 3 &#215; 10<sup>17</sup> DNA damage events take place per hour in the human body. Within clustered DNA lesions, they pose a serious problem for repair proteins, especially for iron&#8722;sulfur glycosylases (MutyH), which can recognize them by the electron-transfer process. It has been found that the presence of both 5&#8242;,8-cyclo-2&#8242;-deoxyadenosine (cdA) diastereomers in the ds-DNA structure, as part of a clustered lesion, can influence vertical radical cation distribution within the proximal part of the double helix, i.e., d[~oxoGcAoxoG~] (7,8-dihydro-8-oxo-2&#8242;-deoxyguaosine - <sup>oxo</sup>dG). Here, the influence of cdA, &#8220;the simplest tandem lesion&#8221;, on the charge transfer through <i>ds</i>-DNA was taken into theoretical consideration at the M062x/6-31+G** level of theory in the aqueous phase. It was shown that the presence of (5&#8242;<i>S</i>)- or (5&#8242;<i>R</i>)-cdA leads to a slowdown in the hole transfer by one order of magnitude between the neighboring dG&#8594;<sup>oxo</sup>dG in comparison to &#8220;native&#8221; <i>ds</i>-DNA. Therefore, it can be concluded that such clustered lesions can lead to defective damage recognition with a subsequent slowing down of the DNA repair process, giving rise to an increase in mutations. As a result, the unrepaired, <sup>oxo</sup>dG: dA base pair prior to genetic information replication can finally result in GC &#8594; TA or AT&#8594;CG transversion. This type of mutation is commonly observed in human cancer cells. Moreover, because local multiple damage sites (LMSD) are effectively produced as a result of ionization factors, the presented data in this article might be useful in developing a new scheme of radiotherapy treatment against the background of DNA repair efficiency.
ISSN:2073-4409